MGE detailed information
MGE type: Conjugative plasmid MGE length: 104674 bp
Accession: NZ_CP024241 Location: 1..104674 Organism: Escherichia coli O114:H49 strain 90-9280 Replicon: plasmid unnamed1
Accession: NZ_CP024241 Location: 1..104674 Organism: Escherichia coli O114:H49 strain 90-9280 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG33_RS25815 () | 1..181 | - | 181 | WP_099483676.1 | hypothetical protein | - |
| COG33_RS25820 () | 182..865 | - | 684 | WP_000086150.1 | DNA methylase | - |
| COG33_RS25825 () | 930..1241 | - | 312 | WP_014640311.1 | hypothetical protein | - |
| COG33_RS25830 () | 1238..2140 | - | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| COG33_RS25835 () | 2217..3940 | - | 1724 | Protein_4 | group II intron reverse transcriptase/maturase | - |
| COG33_RS25855 () | 4966..5214 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| COG33_RS25860 () | 5211..5648 | + | 438 | WP_000109061.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| COG33_RS25865 () | 5648..6919 | + | 1272 | WP_000457531.1 | Y-family DNA polymerase | - |
| COG33_RS25870 () | 6924..7316 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| COG33_RS25875 () | 7321..8292 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| COG33_RS25880 () | 8521..9165 | + | 645 | WP_000633910.1 | AAA family ATPase | - |
| COG33_RS25885 () | 9159..9434 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| COG33_RS25890 () | 9572..10363 | - | 792 | WP_000016491.1 | site-specific integrase | - |
| COG33_RS25895 () | 10360..11049 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| COG33_RS25900 () | 11093..11443 | - | 351 | WP_000493398.1 | hypothetical protein | - |
| COG33_RS25910 () | 11997..12254 | + | 258 | WP_000371891.1 | hypothetical protein | - |
| COG33_RS25915 () | 12254..12844 | + | 591 | WP_000194553.1 | hypothetical protein | - |
| COG33_RS25920 () | 12864..13211 | - | 348 | WP_000142439.1 | hypothetical protein | - |
| COG33_RS25925 () | 13330..13650 | + | 321 | WP_000762577.1 | hypothetical protein | - |
| COG33_RS25930 () | 13652..14329 | - | 678 | WP_000933134.1 | IS481 family transposase ISEc18 | Transposase |
| COG33_RS25940 () | 14623..15483 | + | 861 | WP_000588735.1 | Right origin-binding protein | VF |
| COG33_RS25945 () | 15799..16911 | + | 1113 | WP_001386351.1 | IS4 family transposase IS421 | Transposase |
| COG33_RS25950 () | 17100..17468 | - | 369 | WP_024172958.1 | hypothetical protein | - |
| COG33_RS25955 () | 17769..18462 | - | 694 | Protein_23 | IS1 family transposase | - |
| COG33_RS25960 () | 18647..18886 | - | 240 | Protein_24 | IS5 family transposase ISPan1 | Transposase |
| COG33_RS25965 () | 19038..19841 | - | 804 | WP_000346361.1 | CFA/I fimbrial subunit D | VF |
| COG33_RS25970 () | 20052..20255 | + | 204 | WP_071595697.1 | ANR family transcriptional regulator | - |
| COG33_RS25975 () | 20679..20858 | - | 180 | Protein_27 | transposase domain-containing protein | - |
| COG33_RS25980 () | 20926..22086 | - | 1161 | WP_074522431.1 | group II intron reverse transcriptase/maturase | - |
| COG33_RS27595 () | 22865..23162 | + | 298 | Protein_29 | IS3 family transposase | - |
| COG33_RS25995 () | 23349..23639 | + | 291 | Protein_30 | transposase | - |
| COG33_RS26000 () | 23696..24478 | - | 783 | WP_095892533.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26005 () | 24475..25497 | - | 1023 | WP_001356151.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26015 () | 25683..26845 | + | 1163 | WP_085947598.1 | IS3 family transposase ISEc17 | Transposase |
| COG33_RS26020 () | 27035..28039 | + | 1005 | Protein_34 | IS110 family transposase ISSfl8 | Transposase |
| COG33_RS26025 () | 28279..28683 | - | 405 | WP_001387713.1 | IS3 family transposase ISKpn38 | Transposase |
| COG33_RS26040 () | 29052..29438 | - | 387 | Protein_36 | IS21 family transposase IS21 | Transposase |
| COG33_RS26045 () | 29527..29874 | + | 348 | Protein_37 | transposase | - |
| COG33_RS26050 () | 29943..31157 | - | 1215 | WP_001106584.1 | hypothetical protein | - |
| COG33_RS26060 () | 32019..32258 | + | 240 | WP_000124145.1 | hypothetical protein | - |
| COG33_RS26070 () | 33645..34729 | + | 1085 | Protein_41 | IS91 family transposase | - |
| COG33_RS26075 () | 35092..35718 | - | 627 | WP_000620425.1 | ATP-binding cassette domain-containing protein | - |
| COG33_RS26080 () | 35699..36484 | - | 786 | WP_000775193.1 | hypothetical protein | - |
| COG33_RS26085 () | 36441..37646 | - | 1206 | WP_000673444.1 | TolC family protein | - |
| COG33_RS26090 () | 37643..38779 | - | 1137 | WP_000465104.1 | hypothetical protein | - |
| COG33_RS26095 () | 39563..39838 | - | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| COG33_RS26100 () | 39838..40122 | - | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| COG33_RS26115 () | 41029..42060 | - | 1032 | WP_003964539.1 | replication initiation protein | - |
| COG33_RS26130 () | 43032..43295 | + | 264 | WP_024167927.1 | ash family protein | - |
| COG33_RS26135 () | 43213..43500 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| COG33_RS26145 () | 43942..44475 | + | 534 | WP_001712498.1 | transcription termination factor nusG family protein | - |
| COG33_RS26155 () | 44729..45412 | + | 684 | WP_000213855.1 | hypothetical protein | - |
| COG33_RS26160 () | 45584..45838 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| COG33_RS26165 () | 45881..46168 | + | 288 | WP_000465829.1 | hypothetical protein | - |
| COG33_RS26175 () | 46789..47856 | + | 1068 | WP_001492935.1 | hypothetical protein | VF |
| COG33_RS26180 () | 47856..48293 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| COG33_RS26185 () | 48307..49752 | + | 1446 | WP_001388809.1 | Outer membrane lipoprotein BfpB | VF |
| COG33_RS26190 () | 49803..50585 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26195 () | 50582..51604 | - | 1023 | WP_001356151.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26205 () | 51704..52113 | - | 410 | Protein_60 | IS3 family transposase IS629 | Transposase |
| COG33_RS26215 () | 52606..53382 | + | 777 | WP_001378495.1 | Heat-labile enterotoxin A chain | VF |
| COG33_RS26220 () | 53379..53753 | + | 375 | WP_024167121.1 | Heat-labile enterotoxin B chain | VF |
| COG33_RS26225 () | 54074..54796 | - | 723 | Protein_63 | IS3 family transposase ISSd1 | Transposase |
| COG33_RS26235 () | 56120..56326 | + | 207 | WP_001702528.1 | hypothetical protein | - |
| COG33_RS26240 () | 56339..57103 | + | 765 | WP_000905948.1 | hypothetical protein | - |
| COG33_RS26245 () | 57332..57619 | - | 288 | Protein_67 | IS3 family transposase ISSfl10 | Transposase |
| COG33_RS26250 () | 57739..58857 | - | 1119 | WP_001390944.1 | hypothetical protein | - |
| COG33_RS26255 () | 58854..59039 | - | 186 | WP_001703699.1 | hypothetical protein | - |
| COG33_RS26260 () | 59545..60156 | - | 612 | WP_000694253.1 | hypothetical protein | - |
| COG33_RS26265 () | 60172..62618 | - | 2447 | Protein_71 | TcfC E-set like domain-containing protein | - |
| COG33_RS26270 () | 62615..63286 | - | 672 | WP_000699814.1 | hypothetical protein | - |
| COG33_RS26275 () | 63344..63955 | - | 612 | WP_000727989.1 | CS5 fimbrial subunit | VF |
| COG33_RS26280 () | 64351..65100 | - | 750 | Protein_74 | IS91 family transposase ISSbo1 | Transposase |
| COG33_RS26285 () | 65191..65571 | + | 381 | WP_016241213.1 | IS66 family transposase ISEc8 | Transposase |
| COG33_RS26290 () | 65568..65915 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| COG33_RS26295 () | 65964..67502 | + | 1539 | WP_000099207.1 | IS66 family transposase ISEc22 | Transposase |
| COG33_RS26305 () | 67961..69499 | - | 1539 | WP_000099207.1 | IS66 family transposase ISEc22 | Transposase |
| COG33_RS26310 () | 69548..69895 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| COG33_RS27600 () | 69892..70272 | - | 381 | WP_016241213.1 | IS66 family transposase ISEc8 | Transposase |
| COG33_RS26320 () | 70348..70608 | - | 261 | WP_000362205.1 | hypothetical protein | - |
| COG33_RS26325 () | 70619..71071 | - | 453 | WP_001247870.1 | hypothetical protein | VF |
| COG33_RS26330 () | 71058..72353 | - | 1296 | WP_001388364.1 | type 4b pilus protein PilO2 | - |
| COG33_RS26335 () | 72346..72606 | - | 261 | Protein_84 | PilN family type IVB pilus formation outer membrane protein | - |
| COG33_RS26345 () | 72690..73712 | + | 1023 | WP_001356151.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26350 () | 73709..74491 | + | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| COG33_RS26355 () | 74526..74759 | + | 234 | Protein_87 | IS3 family transposase | - |
| COG33_RS26360 () | 74771..75673 | - | 903 | Protein_88 | IS3 family transposase ISCfr6 | Transposase |
| COG33_RS26365 () | 75684..76835 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| COG33_RS26370 () | 76903..77205 | - | 303 | Protein_90 | IS3 family transposase ISEc31 | Transposase |
| COG33_RS26375 () | 77212..77454 | - | 243 | WP_000451343.1 | hypothetical protein | - |
| COG33_RS26380 () | 77503..82774 | - | 5272 | Protein_92 | Multifunctional conjugation protein TraI | Relaxase |
| COG33_RS26385 () | 82774..84816 | - | 2043 | Protein_93 | type IV conjugative transfer system coupling protein TraD | - |
| COG33_RS26390 () | 84903..85553 | + | 651 | WP_000993931.1 | IS66 family transposase IS679 | Transposase |
| COG33_RS26395 () | 85553..85900 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| COG33_RS26400 () | 85920..87491 | + | 1572 | WP_024190699.1 | IS66 family transposase IS679 | Transposase |
| COG33_RS26405 () | 87522..87665 | + | 144 | Protein_97 | conjugal transfer protein TraV | - |
| COG33_RS26410 () | 87632..88834 | + | 1203 | WP_001388821.1 | IncI1-type conjugal transfer protein TraW | - |
| COG33_RS26415 () | 88863..89447 | + | 585 | WP_001037993.1 | IncI1-type conjugal transfer protein TraX | - |
| COG33_RS26420 () | 89544..91712 | + | 2169 | WP_001388820.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| COG33_RS27355 () | 91788..92386 | + | 599 | Protein_101 | plasmid IncI1-type surface exclusion protein ExcA | - |
| COG33_RS26430 () | 92484..92693 | + | 210 | WP_000416064.1 | hemolysin expression modulator Hha | - |
| COG33_RS27605 () | 92902..93078 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| COG33_RS26435 () | 93143..93439 | - | 297 | WP_001275298.1 | hypothetical protein | - |
| COG33_RS26440 () | 93739..93990 | + | 252 | WP_001291963.1 | hypothetical protein | - |
| COG33_RS26445 () | 94062..94214 | - | 153 | WP_001704300.1 | Hok/Gef family protein | Toxin Detail |
| - () | 94264..94326 | + | 63 | NuclAT_0 | - | - |
| - () | 94264..94326 | + | 63 | NuclAT_0 | - | - |
| - () | 94264..94326 | + | 63 | NuclAT_0 | - | - |
| - () | 94264..94326 | + | 63 | NuclAT_0 | - | - |
| - () | 94567..94622 | + | 56 | NuclAT_1 | - | - |
| - () | 94567..94622 | + | 56 | NuclAT_1 | - | - |
| - () | 94567..94622 | + | 56 | NuclAT_1 | - | - |
| - () | 94567..94622 | + | 56 | NuclAT_1 | - | - |
| COG33_RS26450 () | 94783..95769 | + | 987 | WP_000987364.1 | hypothetical protein | - |
| COG33_RS26455 () | 95986..97194 | + | 1209 | WP_001388819.1 | IncI1-type conjugal transfer protein TrbA | - |
| COG33_RS26460 () | 97213..98283 | + | 1071 | WP_000151586.1 | IncI1-type conjugal transfer protein TrbB | - |
| COG33_RS26465 () | 98276..100567 | + | 2292 | WP_024172021.1 | hypothetical protein | - |
| COG33_RS26470 () | 100640..101458 | - | 819 | WP_000106195.1 | DUF2971 domain-containing protein | - |
| COG33_RS26475 () | 101581..104283 | - | 2703 | WP_024168170.1 | Protein TraI | Relaxase |
| COG33_RS26480 () | 104294..104626 | - | 333 | WP_001283951.1 | IncI1-type relaxosome accessory protein NikA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|