MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 73915 bp
Accession: NZ_CP024230 Location: 1..73915 Organism: Escherichia coli O25:NM strain 2014EL-1343-2 Replicon: plasmid unnamed2
Accession: NZ_CP024230 Location: 1..73915 Organism: Escherichia coli O25:NM strain 2014EL-1343-2 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3411_RS25580 () | 1..123 | - | 123 | Protein_0 | cupin fold metalloprotein, WbuC family | - |
| A3411_RS25585 () | 137..2936 | + | 2800 | Protein_1 | Tn3-like element Tn3 family transposase | - |
| A3411_RS25590 () | 2979..3994 | - | 1016 | Protein_2 | IS3 family transposase ISEc36 | Transposase |
| A3411_RS25595 () | 4389..5045 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| A3411_RS25600 () | 5364..5792 | - | 429 | Protein_4 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| A3411_RS25605 () | 5825..7216 | - | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| A3411_RS25610 () | 7253..7826 | - | 574 | Protein_6 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| A3411_RS25615 () | 7963..8554 | - | 592 | Protein_7 | plasmid pRiA4b ORF-3 family protein | - |
| A3411_RS25620 () | 8661..9098 | - | 438 | Protein_8 | IS6 family transposase IS26 | Transposase |
| A3411_RS25625 () | 9194..10195 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| A3411_RS25630 () | 10371..10715 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| A3411_RS25640 () | 11301..12006 | + | 706 | Protein_11 | IS6-like element IS26 family transposase | - |
| A3411_RS25650 () | 12199..12546 | + | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| A3411_RS25655 () | 12564..14446 | - | 1883 | Protein_13 | colicin 1B | - |
| A3411_RS25660 () | 14725..15390 | - | 666 | WP_000448922.1 | hypothetical protein | - |
| A3411_RS25665 () | 15505..16072 | - | 568 | Protein_15 | hypothetical protein | - |
| A3411_RS25675 () | 16426..17028 | + | 603 | WP_000517695.1 | hypothetical protein | - |
| A3411_RS25680 () | 17085..17579 | + | 495 | WP_001459505.1 | hypothetical protein | - |
| A3411_RS27005 () | 17579..17845 | + | 267 | WP_000955263.1 | hypothetical protein | - |
| A3411_RS25695 () | 18322..18795 | - | 474 | WP_001334658.1 | hypothetical protein | - |
| A3411_RS25700 () | 18912..19760 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| A3411_RS25705 () | 19800..20081 | - | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A3411_RS25710 () | 20078..20347 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| A3411_RS25725 () | 21257..22288 | - | 1032 | WP_000907882.1 | replication initiation protein | - |
| A3411_RS25740 () | 22991..23632 | + | 642 | WP_000335851.1 | transcription termination factor NusG | - |
| A3411_RS25745 () | 23773..24438 | + | 666 | WP_000154140.1 | hypothetical protein | - |
| A3411_RS25755 () | 24709..24939 | + | 231 | WP_071596634.1 | PilI type IV pilus biogenesis protein | - |
| A3411_RS25760 () | 25055..25390 | + | 336 | WP_024168261.1 | hypothetical protein | - |
| A3411_RS25765 () | 25616..26686 | + | 1071 | WP_000730432.1 | hypothetical protein | VF |
| A3411_RS25770 () | 26690..27127 | + | 438 | WP_000539951.1 | hypothetical protein | VF |
| A3411_RS25775 () | 27159..28778 | + | 1620 | WP_001035559.1 | Outer membrane lipoprotein BfpB | VF |
| A3411_RS25780 () | 28799..30094 | + | 1296 | WP_000129884.1 | type 4b pilus protein PilO2 | - |
| A3411_RS25785 () | 30084..30542 | + | 459 | WP_000095887.1 | hypothetical protein | VF |
| A3411_RS25790 () | 30646..32153 | + | 1508 | Protein_33 | Toxin coregulated pilus biosynthesis protein T | VF |
| A3411_RS25795 () | 32155..33249 | + | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| A3411_RS25800 () | 33311..33848 | + | 538 | Protein_35 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| A3411_RS25805 () | 33893..34378 | + | 486 | WP_001080767.1 | hypothetical protein | VF |
| A3411_RS25810 () | 34394..35020 | + | 627 | WP_000939938.1 | prepilin peptidase | - |
| A3411_RS25815 () | 35038..36231 | + | 1194 | WP_086200649.1 | hypothetical protein | VF |
| A3411_RS25820 () | 36288..36551 | - | 264 | Protein_39 | transposase | - |
| A3411_RS25825 () | 36489..36641 | + | 153 | WP_001399803.1 | hypothetical protein | - |
| A3411_RS25830 () | 36792..37616 | + | 825 | WP_001238934.1 | hypothetical protein | - |
| A3411_RS25835 () | 37702..38904 | + | 1203 | WP_000976355.1 | conjugal transfer protein TraF | - |
| A3411_RS25840 () | 38964..39548 | + | 585 | WP_086200648.1 | histidine phosphatase family protein | - |
| A3411_RS25845 () | 39943..40401 | + | 459 | WP_001079806.1 | hypothetical protein | VF |
| A3411_RS25850 () | 40398..41216 | + | 819 | WP_000646093.1 | hypothetical protein | VF |
| A3411_RS25855 () | 41213..42361 | + | 1149 | WP_001024968.1 | putative protein YggR | VF |
| A3411_RS25860 () | 42358..42648 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| A3411_RS25865 () | 42652..43215 | + | 564 | WP_198406014.1 | Phospholipase D | VF |
| A3411_RS25870 () | 43305..47072 | + | 3768 | WP_001141524.1 | hypothetical protein | - |
| A3411_RS25875 () | 47090..47437 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| A3411_RS25880 () | 47434..48126 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| A3411_RS25885 () | 48137..49120 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| A3411_RS25890 () | 49123..50412 | + | 1290 | WP_001271993.1 | conjugal transfer protein TraO | - |
| A3411_RS25895 () | 50412..51116 | + | 705 | WP_001295718.1 | IncI1-type conjugal transfer protein TraP | - |
| A3411_RS25900 () | 51116..51643 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| A3411_RS25905 () | 51694..52099 | + | 406 | Protein_56 | IncI1-type conjugal transfer protein TraR | - |
| A3411_RS25910 () | 52163..52351 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| A3411_RS25915 () | 52335..53135 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| A3411_RS25920 () | 53225..56269 | + | 3045 | WP_001024771.1 | IncI1-type conjugal transfer protein TraU | - |
| A3411_RS25925 () | 56269..56883 | + | 615 | WP_032174792.1 | IncI1-type conjugal transfer protein TraV | - |
| A3411_RS25930 () | 56850..58052 | + | 1203 | WP_001189157.1 | IncI1-type conjugal transfer protein TraW | - |
| A3411_RS25935 () | 58081..58665 | + | 585 | WP_001037992.1 | IncI1-type conjugal transfer protein TraX | - |
| A3411_RS25940 () | 58762..60931 | + | 2170 | Protein_63 | DotA/TraY family protein | - |
| A3411_RS25945 () | 61002..61664 | + | 663 | WP_000644795.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| A3411_RS25950 () | 61736..61945 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| A3411_RS27010 () | 62348..62524 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| A3411_RS25955 () | 62589..62885 | - | 297 | WP_001275298.1 | hypothetical protein | - |
| A3411_RS25960 () | 63185..63436 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| A3411_RS25965 () | 63508..63660 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - () | 63710..63772 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63710..63772 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63710..63772 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63710..63772 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| A3411_RS25970 () | 63975..65066 | + | 1092 | WP_001756226.1 | hypothetical protein | - |
| - () | 65136..65194 | + | 59 | NuclAT_1 | - | - |
| - () | 65136..65194 | + | 59 | NuclAT_1 | - | - |
| - () | 65136..65194 | + | 59 | NuclAT_1 | - | - |
| - () | 65136..65194 | + | 59 | NuclAT_1 | - | - |
| A3411_RS25975 () | 65374..66582 | + | 1209 | WP_001295719.1 | IncI1-type conjugal transfer protein TrbA | - |
| A3411_RS25980 () | 66601..67671 | + | 1071 | WP_000151590.1 | IncI1-type conjugal transfer protein TrbB | - |
| A3411_RS27015 () | 67664..68359 | + | 696 | WP_198406012.1 | hypothetical protein | - |
| A3411_RS25990 () | 69462..69957 | + | 496 | Protein_74 | type IV secretion protein IcmO | - |
| A3411_RS25995 () | 70029..70848 | - | 820 | Protein_75 | DUF2971 domain-containing protein | - |
| A3411_RS26000 () | 70970..73672 | - | 2703 | WP_024190603.1 | Protein TraI | Relaxase |
| A3411_RS26850 () | 73683..73915 | - | 233 | Protein_77 | IncI1-type relaxosome accessory protein NikA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|