MGE detailed information
MGE type: Conjugative plasmid MGE length: 87351 bp
Accession: NZ_CP024152 Location: 1..87351 Organism: Escherichia coli strain 14EC033 Replicon: plasmid p14EC033e
Accession: NZ_CP024152 Location: 1..87351 Organism: Escherichia coli strain 14EC033 Replicon: plasmid p14EC033e
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR539_RS26070 () | 74..1228 | + | 1155 | WP_001139955.1 | integrase | - |
| CR539_RS26075 () | 1379..2203 | + | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| CR539_RS26080 () | 2289..3491 | + | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| CR539_RS26085 () | 3551..4135 | + | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| CR539_RS26090 () | 4530..4988 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| CR539_RS26095 () | 4985..5803 | + | 819 | WP_101969589.1 | hypothetical protein | VF |
| CR539_RS26100 () | 5800..6948 | + | 1149 | WP_001024976.1 | putative protein YggR | VF |
| CR539_RS26105 () | 6945..7235 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| CR539_RS26110 () | 7250..7801 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| CR539_RS26115 () | 7891..11658 | + | 3768 | WP_077134477.1 | DNA primase | - |
| CR539_RS26120 () | 11676..12023 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CR539_RS26125 () | 12020..12712 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| CR539_RS26130 () | 12723..13706 | + | 984 | WP_021513963.1 | hypothetical protein | VF |
| CR539_RS26135 () | 13709..14998 | + | 1290 | WP_101969590.1 | conjugal transfer protein TraO | - |
| CR539_RS26140 () | 14998..15702 | + | 705 | WP_023155244.1 | IncI1-type conjugal transfer protein TraP | - |
| CR539_RS26145 () | 15702..16229 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| CR539_RS26150 () | 16280..16684 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| CR539_RS26155 () | 16748..16936 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CR539_RS26160 () | 16920..17720 | + | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| CR539_RS26165 () | 17810..20854 | + | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| CR539_RS26170 () | 20854..21468 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| CR539_RS26175 () | 21435..22637 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| CR539_RS26180 () | 22666..23250 | + | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| CR539_RS26185 () | 23347..25515 | + | 2169 | WP_000698366.1 | DotA/TraY family protein | - |
| CR539_RS26190 () | 25580..26242 | + | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CR539_RS26195 () | 26314..26523 | - | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| CR539_RS28325 () | 26855..27031 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| CR539_RS26200 () | 27690..27941 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| CR539_RS26205 () | 28013..28165 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - () | 28220..28277 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28220..28277 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28220..28277 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28220..28277 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| CR539_RS26210 () | 28438..29424 | + | 987 | WP_001257838.1 | hypothetical protein | - |
| CR539_RS26215 () | 29642..30850 | + | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| CR539_RS26220 () | 30869..31939 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| CR539_RS26225 () | 31932..34223 | + | 2292 | WP_101969591.1 | conjugal transfer protein TrbC | - |
| CR539_RS26230 () | 34260..36959 | - | 2700 | WP_052971501.1 | Protein TraI | Relaxase |
| CR539_RS26235 () | 36970..37302 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| CR539_RS26240 () | 37536..37871 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CR539_RS26245 () | 37957..38805 | - | 849 | WP_021513954.1 | DUF4942 domain-containing protein | - |
| CR539_RS28330 () | 39155..39352 | + | 198 | WP_001161109.1 | hypothetical protein | - |
| CR539_RS26260 () | 39386..39637 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| CR539_RS26265 () | 39668..39901 | - | 234 | WP_171545351.1 | hypothetical protein | - |
| CR539_RS26270 () | 39901..40803 | - | 903 | WP_001690644.1 | Recombination-promoting nuclease RpnA | VF |
| CR539_RS26275 () | 40868..41134 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| CR539_RS26280 () | 41226..41660 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| CR539_RS26295 () | 42389..42889 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| CR539_RS26305 () | 43352..43948 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| CR539_RS26310 () | 43945..44664 | - | 720 | WP_021513992.1 | plasmid SOS inhibition protein A | - |
| CR539_RS26315 () | 44661..45095 | - | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| CR539_RS26320 () | 45150..47108 | - | 1959 | WP_101969592.1 | ParB/RepB/Spo0J family partition protein | - |
| CR539_RS26325 () | 47167..47400 | - | 234 | WP_025769126.1 | DUF905 domain-containing protein | - |
| CR539_RS26330 () | 47458..47985 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| CR539_RS26340 () | 48369..48683 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| CR539_RS26350 () | 48754..48945 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| CR539_RS26355 () | 48942..49364 | - | 423 | WP_000271744.1 | DUF1380 family protein | - |
| CR539_RS26360 () | 49411..49713 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CR539_RS28335 () | 50248..51018 | - | 771 | WP_001006225.1 | hypothetical protein | - |
| CR539_RS26375 () | 51063..51497 | - | 435 | WP_021547622.1 | DUF1380 family protein | - |
| CR539_RS26380 () | 51509..51730 | - | 222 | WP_001104887.1 | hypothetical protein | - |
| CR539_RS26385 () | 51731..52414 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CR539_RS26390 () | 52490..52801 | - | 312 | WP_032317461.1 | hypothetical protein | - |
| CR539_RS26395 () | 52798..53699 | - | 902 | Protein_59 | DUF1281 domain-containing protein | - |
| CR539_RS26405 () | 54117..54365 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| CR539_RS26410 () | 54362..54800 | + | 439 | Protein_61 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CR539_RS26415 () | 54800..56073 | + | 1274 | Protein_62 | translesion error-prone DNA polymerase V subunit UmuC | - |
| CR539_RS26420 () | 56075..56491 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| CR539_RS26425 () | 56484..57464 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| CR539_RS26430 () | 57878..58186 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| CR539_RS26435 () | 58273..58917 | - | 645 | WP_001144036.1 | ParA family protein | - |
| CR539_RS26440 () | 59097..59876 | - | 780 | WP_052971527.1 | site-specific integrase | - |
| CR539_RS26445 () | 59878..60291 | - | 414 | WP_001401590.1 | hypothetical protein | - |
| CR539_RS26450 () | 60860..61114 | + | 255 | WP_000343103.1 | hypothetical protein | - |
| CR539_RS26455 () | 61114..61704 | + | 591 | WP_000194572.1 | hypothetical protein | - |
| CR539_RS26460 () | 61724..62071 | - | 348 | WP_001582578.1 | hypothetical protein | - |
| CR539_RS26470 () | 62200..62535 | + | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| CR539_RS26475 () | 62557..64437 | - | 1881 | WP_001582575.1 | colicin 1A | - |
| CR539_RS26485 () | 64716..66062 | - | 1347 | WP_001132032.1 | hypothetical protein | - |
| CR539_RS26495 () | 66416..67018 | + | 603 | WP_000517694.1 | hypothetical protein | - |
| CR539_RS26500 () | 67074..67568 | + | 495 | WP_015058884.1 | hypothetical protein | - |
| CR539_RS26505 () | 67568..67834 | + | 267 | WP_000627832.1 | hypothetical protein | - |
| CR539_RS26510 () | 68026..68307 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| CR539_RS26515 () | 68413..68688 | - | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CR539_RS26520 () | 68688..68972 | - | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CR539_RS26540 () | 69876..70907 | - | 1032 | WP_000907852.1 | replication initiation protein | - |
| CR539_RS26555 () | 71880..72143 | + | 264 | WP_001324596.1 | ash family protein | - |
| CR539_RS26560 () | 72061..72348 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| CR539_RS26570 () | 72790..73323 | + | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| CR539_RS26580 () | 73577..74260 | + | 684 | WP_000213863.1 | hypothetical protein | - |
| CR539_RS26585 () | 74432..74686 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| CR539_RS26595 () | 75438..76505 | + | 1068 | WP_021513968.1 | hypothetical protein | VF |
| CR539_RS26600 () | 76505..76942 | + | 438 | WP_000539811.1 | hypothetical protein | VF |
| CR539_RS26605 () | 76956..78638 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| CR539_RS26610 () | 78631..79926 | + | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| CR539_RS26615 () | 79913..80365 | + | 453 | WP_001247333.1 | hypothetical protein | VF |
| CR539_RS26620 () | 80376..81929 | + | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CR539_RS26625 () | 81942..83027 | + | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CR539_RS26630 () | 83044..83658 | + | 615 | WP_000908228.1 | hypothetical protein | VF |
| CR539_RS26635 () | 83668..84228 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| CR539_RS26640 () | 84213..84869 | + | 657 | WP_001193551.1 | hypothetical protein | VF |
| CR539_RS26645 () | 84857..86293 | + | 1437 | WP_015058913.1 | hypothetical protein | VF |
| CR539_RS28340 () | 86290..86487 | - | 198 | WP_032159596.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|