MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 159746 bp
Accession: NZ_CP023712 Location: 1..159746 Organism: Rhodococcus ruber strain YC-YT1 Replicon: plasmid unnamed1
Accession: NZ_CP023712 Location: 1..159746 Organism: Rhodococcus ruber strain YC-YT1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YT1_RS00010 () | 392..1045 | + | 654 | WP_119699042.1 | ArsR family transcriptional regulator | - |
| YT1_RS00015 () | 1068..1598 | - | 531 | WP_119699043.1 | DinB family protein | - |
| YT1_RS00020 () | 2557..3447 | + | 891 | WP_162919233.1 | hypothetical protein | - |
| YT1_RS00025 () | 3462..3725 | + | 264 | WP_119699045.1 | hypothetical protein | - |
| YT1_RS00030 () | 3722..4372 | + | 651 | WP_119699046.1 | hypothetical protein | - |
| YT1_RS00040 () | 4984..5394 | + | 411 | WP_119699047.1 | hypothetical protein | - |
| YT1_RS00045 () | 6146..6535 | + | 390 | WP_119699158.1 | hypothetical protein | - |
| YT1_RS00050 () | 7013..7984 | + | 972 | WP_119699048.1 | alpha/beta fold hydrolase | - |
| YT1_RS00055 () | 8541..8771 | + | 231 | WP_119699049.1 | alpha/beta hydrolase | - |
| YT1_RS00060 () | 8763..9602 | - | 840 | WP_119699050.1 | IS21 family transposase IS5376 | Transposase |
| YT1_RS00065 () | 9599..10954 | - | 1356 | WP_119699051.1 | DDE-type integrase/transposase/recombinase | - |
| YT1_RS00070 () | 11117..11767 | + | 651 | WP_162919234.1 | alpha/beta hydrolase | - |
| YT1_RS26965 () | 11918..12082 | - | 165 | WP_162919235.1 | IS982 family transposase ISCef3 | Transposase |
| YT1_RS00075 () | 12842..13570 | - | 729 | WP_119699053.1 | toll/interleukin-1 receptor domain-containing protein | - |
| YT1_RS00080 () | 14101..14763 | - | 663 | WP_119699054.1 | hypothetical protein | - |
| YT1_RS00090 () | 15586..16398 | + | 813 | WP_119699056.1 | hypothetical protein | - |
| YT1_RS00095 () | 16428..17564 | + | 1137 | WP_119699159.1 | XRE family transcriptional regulator | - |
| YT1_RS00100 () | 17835..18665 | + | 831 | WP_119699057.1 | IS5 family transposase ISGeob2 | Transposase |
| YT1_RS00105 () | 18757..19416 | + | 660 | WP_119699058.1 | hypothetical protein | - |
| YT1_RS00110 () | 19449..20477 | - | 1029 | WP_119699059.1 | hypothetical protein | - |
| YT1_RS00115 () | 20481..21647 | - | 1167 | WP_162919236.1 | site-specific integrase | - |
| YT1_RS00120 () | 22513..22773 | + | 261 | WP_119699160.1 | ribbon-helix-helix domain-containing protein | - |
| YT1_RS27430 () | 22761..22967 | - | 207 | WP_208643835.1 | hypothetical protein | - |
| YT1_RS00135 () | 23448..24200 | - | 753 | WP_162919237.1 | hypothetical protein | - |
| YT1_RS26970 () | 24836..25075 | + | 240 | WP_162919238.1 | hypothetical protein | - |
| YT1_RS00145 () | 25362..25775 | + | 414 | WP_119699063.1 | hypothetical protein | - |
| YT1_RS00150 () | 25912..26469 | + | 558 | WP_119699064.1 | hypothetical protein | - |
| YT1_RS00155 () | 26593..26898 | + | 306 | WP_119699065.1 | hypothetical protein | - |
| YT1_RS00160 () | 26972..27319 | + | 348 | WP_119699161.1 | amino acid permease | - |
| YT1_RS00165 () | 27532..28194 | + | 663 | Protein_30 | IS21 family transposase IS1415 | Transposase |
| YT1_RS00170 () | 28259..29484 | + | 1226 | Protein_31 | IS3 family transposase IS987 | Transposase |
| YT1_RS26975 () | 29608..29760 | + | 153 | WP_162919239.1 | hypothetical protein | - |
| YT1_RS00175 () | 29904..31129 | + | 1226 | Protein_33 | IS3 family transposase IS987 | Transposase |
| YT1_RS00180 () | 31182..31616 | - | 435 | WP_119699066.1 | ATP-dependent Clp protease ATP-binding subunit ClpC1 | VF |
| YT1_RS26980 () | 32329..32499 | - | 171 | WP_162919240.1 | hypothetical protein | - |
| YT1_RS00190 () | 32591..32854 | + | 264 | WP_119699068.1 | hypothetical protein | - |
| YT1_RS00195 () | 33135..33455 | + | 321 | WP_162919241.1 | hypothetical protein | - |
| YT1_RS00200 () | 33553..34014 | - | 462 | WP_119699162.1 | VOC family protein | - |
| YT1_RS26985 () | 34314..34502 | - | 189 | WP_162919242.1 | hypothetical protein | - |
| YT1_RS00205 () | 35046..35213 | - | 168 | WP_208643836.1 | hypothetical protein | - |
| YT1_RS00210 () | 35494..36048 | + | 555 | WP_119699070.1 | hypothetical protein | - |
| YT1_RS00215 () | 36364..36633 | + | 270 | WP_119699071.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| YT1_RS00220 () | 36652..36903 | + | 252 | WP_119699163.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YT1_RS00225 () | 37101..37631 | - | 531 | WP_119699072.1 | hypothetical protein | - |
| YT1_RS00230 () | 37679..38089 | - | 411 | WP_119699073.1 | hypothetical protein | - |
| YT1_RS00235 () | 37995..39349 | + | 1355 | Protein_46 | 3' terminal RNA ribose 2'-O-methyltransferase Hen1 | - |
| YT1_RS00240 () | 39346..41856 | + | 2511 | WP_119699074.1 | polynucleotide kinase-phosphatase | - |
| YT1_RS00245 () | 42005..42438 | + | 434 | Protein_48 | nitronate monooxygenase | - |
| YT1_RS00250 () | 42851..43126 | + | 276 | WP_119699075.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| YT1_RS00255 () | 43123..43404 | + | 282 | WP_119699076.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YT1_RS00260 () | 44153..44800 | - | 648 | WP_119699077.1 | TetR/AcrR family transcriptional regulator | - |
| YT1_RS00265 () | 45107..46690 | + | 1584 | WP_119699078.1 | aldehyde dehydrogenase family protein | - |
| YT1_RS00270 () | 47024..48574 | + | 1551 | WP_119699079.1 | MFS transporter | - |
| YT1_RS26990 () | 48883..49197 | + | 315 | WP_162919243.1 | IS1380 family transposase IS1677 | Transposase |
| YT1_RS26995 () | 49635..50024 | + | 390 | WP_162919244.1 | hypothetical protein | - |
| YT1_RS00275 () | 50043..50258 | + | 216 | WP_119699080.1 | IS1380 family transposase ISRjo1 | Transposase |
| YT1_RS00280 () | 50408..51064 | - | 657 | WP_119699081.1 | nitroreductase family protein | - |
| YT1_RS00285 () | 51338..52519 | - | 1182 | WP_119699082.1 | acyl-CoA/acyl-ACP dehydrogenase | - |
| YT1_RS00290 () | 52748..53149 | + | 402 | WP_119699083.1 | hypothetical protein | - |
| YT1_RS00295 () | 53146..54513 | + | 1368 | WP_119699084.1 | DUF1446 domain-containing protein | - |
| YT1_RS00300 () | 54506..55273 | + | 768 | WP_119699085.1 | enoyl-CoA hydratase/isomerase family protein | - |
| YT1_RS00305 () | 55276..56184 | + | 909 | WP_119699086.1 | phosphate acetyltransferase | - |
| YT1_RS00310 () | 56289..57506 | + | 1218 | WP_119699087.1 | acetyl-CoA C-acetyltransferase | - |
| YT1_RS27000 () | 58070..58555 | - | 486 | WP_162919250.1 | hypothetical protein | - |
| YT1_RS27005 () | 59239..59880 | - | 642 | WP_162919245.1 | PaaI family thioesterase | - |
| YT1_RS00320 () | 60238..60642 | - | 405 | WP_162919246.1 | OB-fold domain-containing protein | - |
| YT1_RS00325 () | 60635..61801 | - | 1167 | WP_119699090.1 | thiolase family protein | - |
| YT1_RS00330 () | 61803..62678 | - | 876 | WP_162919247.1 | cyclase family protein | - |
| YT1_RS27010 () | 62746..62910 | - | 165 | WP_162919248.1 | hypothetical protein | - |
| YT1_RS00335 () | 62976..64688 | - | 1713 | WP_119699092.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| YT1_RS00340 () | 65211..65888 | + | 678 | WP_119699093.1 | HTH-type transcriptional repressor KstR2 | VF |
| YT1_RS00345 () | 66216..67415 | - | 1200 | WP_119699094.1 | YbfB/YjiJ family MFS transporter | - |
| YT1_RS00350 () | 67438..69282 | - | 1845 | WP_119699095.1 | AMP-binding protein | - |
| YT1_RS00355 () | 69307..70503 | - | 1197 | WP_119699164.1 | phenylacetate--CoA ligase family protein | - |
| YT1_RS00360 () | 70876..71271 | + | 396 | WP_119699096.1 | hypothetical protein | - |
| YT1_RS00365 () | 71268..72635 | + | 1368 | WP_119699097.1 | DUF1446 domain-containing protein | - |
| YT1_RS00370 () | 72790..73630 | - | 841 | Protein_77 | IS5/IS1182 family transposase | - |
| YT1_RS00375 () | 74166..75008 | - | 843 | WP_119699098.1 | Putative short-chain type dehydrogenase/reductase/MSMEI_5872 | VF |
| YT1_RS00385 () | 75305..75841 | + | 537 | WP_119699099.1 | ATP-binding protein | - |
| YT1_RS00390 () | 75847..77118 | + | 1272 | WP_119699100.1 | hypothetical protein | - |
| YT1_RS00395 () | 78921..79430 | - | 510 | WP_119699101.1 | SRPBCC family protein | - |
| YT1_RS00400 () | 79667..79928 | + | 262 | Protein_82 | FAD-binding protein | - |
| YT1_RS00405 () | 80703..81563 | - | 861 | WP_119699102.1 | hypothetical protein | - |
| YT1_RS00410 () | 82142..83155 | - | 1014 | WP_119699103.1 | DUF1016 family protein | - |
| YT1_RS00415 () | 83630..83938 | - | 309 | WP_119699104.1 | hypothetical protein | - |
| YT1_RS00420 () | 84079..84600 | - | 522 | WP_119699105.1 | hypothetical protein | - |
| YT1_RS00425 () | 85537..85719 | - | 183 | WP_119699106.1 | hypothetical protein | - |
| YT1_RS27015 () | 86317..86568 | + | 252 | WP_162919232.1 | hypothetical protein | - |
| YT1_RS00430 () | 87419..88408 | - | 990 | WP_119699107.1 | DUF2637 domain-containing protein | - |
| YT1_RS00440 () | 88944..89726 | - | 783 | WP_119699109.1 | AAA family ATPase | - |
| YT1_RS00445 () | 90653..91297 | - | 645 | WP_119699110.1 | dihydrofolate reductase family protein | - |
| YT1_RS00450 () | 91767..93566 | - | 1800 | WP_119699111.1 | hypothetical protein | - |
| YT1_RS00460 () | 94318..94824 | + | 507 | WP_119699113.1 | hypothetical protein | - |
| YT1_RS00465 () | 94821..95948 | + | 1128 | WP_119699114.1 | hypothetical protein | - |
| YT1_RS00470 () | 95966..97312 | + | 1347 | WP_119699115.1 | cytochrome P450 | - |
| YT1_RS00475 () | 97299..97718 | - | 420 | WP_119699116.1 | hypothetical protein | - |
| YT1_RS27020 () | 97715..98404 | - | 690 | WP_162919249.1 | helix-turn-helix domain-containing protein | - |
| YT1_RS00485 () | 98825..100369 | + | 1545 | WP_119699165.1 | cutinase family protein | - |
| YT1_RS00490 () | 100439..101518 | + | 1080 | WP_119699166.1 | insoluble domain protein | - |
| YT1_RS00495 () | 101622..102680 | + | 1059 | WP_119699118.1 | hypothetical protein | - |
| YT1_RS00500 () | 102677..103450 | + | 774 | WP_119699119.1 | hypothetical protein | - |
| YT1_RS00505 () | 103447..104019 | + | 573 | WP_119699120.1 | hypothetical protein | - |
| YT1_RS00510 () | 104049..104342 | + | 294 | WP_119699121.1 | hypothetical protein | - |
| YT1_RS00515 () | 104357..104734 | + | 378 | WP_119699122.1 | hypothetical protein | - |
| YT1_RS00520 () | 104731..105336 | + | 606 | WP_119699123.1 | hypothetical protein | - |
| YT1_RS00525 () | 105333..106175 | + | 843 | WP_119699124.1 | hypothetical protein | - |
| YT1_RS00530 () | 106166..107758 | + | 1593 | WP_119699125.1 | hypothetical protein | - |
| YT1_RS00535 () | 107755..109260 | + | 1506 | WP_119699126.1 | hypothetical protein | - |
| YT1_RS00540 () | 109282..111036 | + | 1755 | WP_119699127.1 | ATP-binding protein | - |
| YT1_RS00545 () | 111033..111347 | + | 315 | WP_119699128.1 | hypothetical protein | - |
| YT1_RS00550 () | 111344..112975 | + | 1632 | WP_119699129.1 | M23 family metallopeptidase | - |
| YT1_RS00555 () | 112990..113541 | + | 552 | WP_119699130.1 | hypothetical protein | - |
| YT1_RS00560 () | 113558..115549 | + | 1992 | WP_119699131.1 | type IV secretory system conjugative DNA transfer family protein | - |
| YT1_RS00565 () | 115552..116058 | + | 507 | WP_119699132.1 | DUF4913 domain-containing protein | - |
| YT1_RS00570 () | 116477..117679 | + | 1203 | WP_119699133.1 | helix-turn-helix domain-containing protein | - |
| YT1_RS00575 () | 117832..119166 | + | 1335 | WP_119699167.1 | MFS transporter | - |
| YT1_RS00580 () | 119227..120456 | + | 1230 | WP_119699134.1 | thiolase family protein | - |
| YT1_RS00585 () | 120459..122018 | + | 1560 | WP_119699135.1 | AMP-binding protein | - |
| YT1_RS00590 () | 122041..122853 | + | 813 | WP_119699136.1 | Dihydroanticapsin 7-dehydrogenase | VF |
| YT1_RS00595 () | 123165..124877 | + | 1713 | WP_119699137.1 | IS1634 family transposase ISDha15 | Transposase |
| YT1_RS00600 () | 125183..126733 | + | 1551 | WP_119699138.1 | IS21 family transposase IS1415 | Transposase |
| YT1_RS00605 () | 126730..127509 | + | 780 | WP_119699139.1 | IS21 family transposase IS1415 | Transposase |
| YT1_RS00610 () | 127527..127883 | + | 357 | WP_119699140.1 | IS5 family transposase ISSan1 | Transposase |
| YT1_RS00615 () | 128133..129175 | + | 1043 | Protein_124 | IS110 family transposase ISEc21 | Transposase |
| YT1_RS00620 () | 129588..130211 | - | 624 | WP_119699168.1 | TetR/AcrR family transcriptional regulator | - |
| YT1_RS00625 () | 130296..131120 | + | 825 | WP_119699141.1 | CoA transferase | - |
| YT1_RS00630 () | 131145..132320 | + | 1176 | WP_119699142.1 | thiolase family protein | - |
| YT1_RS00635 () | 132332..134008 | + | 1677 | WP_119699143.1 | long-chain-fatty-acid--CoA ligase | - |
| YT1_RS00640 () | 134005..134787 | + | 783 | WP_119699144.1 | enoyl-CoA hydratase/isomerase family protein | - |
| YT1_RS00645 () | 134796..135956 | + | 1161 | WP_119699145.1 | acyl-CoA dehydrogenase family protein | - |
| YT1_RS00650 () | 135993..136196 | + | 204 | Protein_131 | Long-chain-fatty-acid--CoA ligase | VF |
| YT1_RS00655 () | 136253..136729 | + | 477 | WP_119699146.1 | MaoC family dehydratase N-terminal domain-containing protein | - |
| YT1_RS00660 () | 137186..138337 | - | 1152 | WP_119699147.1 | hypothetical protein | - |
| YT1_RS00665 () | 138386..142672 | - | 4287 | WP_119699148.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| YT1_RS00670 () | 142924..143511 | + | 588 | WP_119699149.1 | hypothetical protein | - |
| YT1_RS00680 () | 144048..145037 | - | 990 | WP_119699150.1 | Abi family protein | - |
| YT1_RS00685 () | 145142..146098 | - | 957 | WP_119699151.1 | Fic family protein | - |
| YT1_RS00690 () | 146100..146288 | - | 189 | WP_119699152.1 | hypothetical protein | - |
| YT1_RS00695 () | 146368..155370 | - | 9003 | WP_119699153.1 | DEAD/DEAH box helicase family protein | - |
| YT1_RS00700 () | 155466..156098 | - | 633 | WP_119699154.1 | hypothetical protein | - |
| YT1_RS00710 () | 157091..158290 | + | 1200 | WP_119699156.1 | cysteine desulfurase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|