MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 186658 bp
Accession: NZ_CP023670 Location: 1..186658 Organism: Methylomonas koyamae strain LM6 Replicon: plasmid pLM6
Accession: NZ_CP023670 Location: 1..186658 Organism: Methylomonas koyamae strain LM6 Replicon: plasmid pLM6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKLM6_RS21990 () | 310..885 | - | 576 | WP_096876812.1 | Uma2 family endonuclease | - |
| MKLM6_RS21995 () | 1064..1354 | - | 291 | WP_096876813.1 | hypothetical protein | - |
| MKLM6_RS23680 () | 1351..3003 | - | 1653 | WP_198402818.1 | hypothetical protein | - |
| MKLM6_RS22005 () | 3614..3949 | - | 336 | WP_157770359.1 | hypothetical protein | - |
| MKLM6_RS22010 () | 4023..4316 | - | 294 | WP_096876925.1 | hypothetical protein | - |
| MKLM6_RS22015 () | 4739..5362 | - | 624 | WP_198402819.1 | hypothetical protein | - |
| MKLM6_RS22020 () | 5508..5981 | - | 474 | WP_096876815.1 | DNA repair protein RadC | - |
| MKLM6_RS22025 () | 6134..7903 | - | 1770 | WP_096876816.1 | DUF4942 domain-containing protein | - |
| MKLM6_RS22030 () | 8011..8592 | - | 582 | WP_096876926.1 | hypothetical protein | - |
| MKLM6_RS22035 () | 8746..9102 | + | 357 | WP_157770360.1 | hypothetical protein | - |
| MKLM6_RS22040 () | 9110..9616 | - | 507 | WP_096876818.1 | hypothetical protein | - |
| MKLM6_RS22045 () | 10005..11789 | - | 1785 | WP_096876927.1 | nitric oxide reductase activation protein | - |
| MKLM6_RS22050 () | 11872..13071 | - | 1200 | WP_096876819.1 | DUF3150 domain-containing protein | - |
| MKLM6_RS22055 () | 13182..13484 | - | 303 | WP_157770361.1 | hypothetical protein | - |
| MKLM6_RS22060 () | 13639..14580 | - | 942 | WP_096876821.1 | AAA family ATPase | - |
| MKLM6_RS23280 () | 14712..14921 | + | 210 | WP_157770362.1 | hypothetical protein | - |
| MKLM6_RS22065 () | 14892..15182 | - | 291 | WP_157770363.1 | hypothetical protein | - |
| MKLM6_RS22070 () | 15293..15529 | + | 237 | WP_054758403.1 | hypothetical protein | - |
| MKLM6_RS23285 () | 15544..15774 | - | 231 | WP_054758400.1 | hypothetical protein | - |
| MKLM6_RS22075 () | 16084..17082 | - | 999 | WP_096876823.1 | YqaJ viral recombinase family protein | - |
| MKLM6_RS22080 () | 17079..17426 | - | 348 | WP_082889552.1 | hypothetical protein | - |
| MKLM6_RS22085 () | 17517..18482 | - | 966 | WP_096876824.1 | phage recombination protein Bet | - |
| MKLM6_RS22095 () | 18930..19268 | - | 339 | WP_096876826.1 | endoribonuclease MazF | Toxin Detail |
| MKLM6_RS22100 () | 19268..19516 | - | 249 | WP_096876827.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| MKLM6_RS22105 () | 19855..20760 | + | 906 | WP_096876828.1 | DNA-binding protein | - |
| MKLM6_RS22110 () | 21103..21999 | - | 897 | WP_096876928.1 | poly(3-hydroxybutyrate) depolymerase | - |
| MKLM6_RS22115 () | 22045..22542 | - | 498 | Protein_26 | hypothetical protein | - |
| MKLM6_RS22120 () | 22693..23019 | - | 327 | WP_054759895.1 | EthD family reductase | - |
| MKLM6_RS22125 () | 23137..23286 | + | 150 | Protein_28 | HTH-type transcriptional regulator CynR | VF |
| MKLM6_RS22130 () | 23412..24758 | + | 1347 | WP_064020771.1 | IS5 family transposase ISNoc2 | Transposase |
| MKLM6_RS22135 () | 24755..25537 | + | 783 | WP_096876830.1 | LysR family transcriptional regulator | - |
| MKLM6_RS22140 () | 25753..27345 | - | 1593 | WP_198402820.1 | tyrosine-type recombinase/integrase | - |
| MKLM6_RS22145 () | 27456..28373 | - | 918 | WP_157770364.1 | DNA-binding protein | - |
| MKLM6_RS22150 () | 28604..29293 | + | 690 | WP_096876833.1 | hypothetical protein | - |
| MKLM6_RS22155 () | 29527..29835 | + | 309 | WP_096876834.1 | hypothetical protein | - |
| MKLM6_RS22160 () | 30112..31338 | + | 1227 | WP_096876835.1 | DUF1173 domain-containing protein | - |
| MKLM6_RS22165 () | 31382..31741 | + | 360 | WP_064023657.1 | hypothetical protein | - |
| MKLM6_RS22170 () | 32019..33956 | + | 1938 | WP_082881122.1 | PRTRC system ParB family protein | - |
| MKLM6_RS22175 () | 33959..34396 | + | 438 | WP_064023659.1 | hypothetical protein | - |
| MKLM6_RS22180 () | 34450..34623 | + | 174 | WP_198402821.1 | hypothetical protein | - |
| MKLM6_RS22185 () | 34711..35931 | + | 1221 | WP_157770365.1 | hypothetical protein | - |
| MKLM6_RS22190 () | 35924..36694 | + | 771 | WP_096876837.1 | PRTRC system protein B | - |
| MKLM6_RS22195 () | 36706..37335 | + | 630 | WP_096876838.1 | PRTRC system protein A | - |
| MKLM6_RS23290 () | 37371..37586 | + | 216 | WP_157770366.1 | hypothetical protein | - |
| MKLM6_RS22200 () | 37651..38388 | + | 738 | WP_096876839.1 | PRTRC system ThiF family protein | - |
| MKLM6_RS22205 () | 38467..38709 | + | 243 | WP_082409599.1 | WGR domain-containing protein | - |
| MKLM6_RS22210 () | 38740..39057 | + | 318 | WP_054758361.1 | Trans-acting regulatory protein HvrA | VF |
| MKLM6_RS23295 () | 39116..39754 | + | 639 | WP_140911834.1 | hypothetical protein | - |
| MKLM6_RS22220 () | 40478..42247 | - | 1770 | WP_096876841.1 | transposase | - |
| MKLM6_RS22225 () | 42269..44188 | - | 1920 | WP_096876842.1 | DEAD/DEAH box helicase family protein | - |
| MKLM6_RS22230 () | 44826..45704 | + | 879 | WP_157770368.1 | hypothetical protein | - |
| MKLM6_RS22235 () | 45706..48813 | + | 3108 | WP_096876844.1 | hypothetical protein | - |
| MKLM6_RS23300 () | 48891..49232 | + | 342 | WP_157770369.1 | hypothetical protein | - |
| MKLM6_RS23305 () | 49235..49522 | + | 288 | WP_157770370.1 | hypothetical protein | - |
| MKLM6_RS22240 () | 49997..50305 | + | 309 | WP_096876845.1 | hypothetical protein | - |
| MKLM6_RS23310 () | 50308..50613 | + | 306 | WP_157770371.1 | hypothetical protein | - |
| MKLM6_RS22245 () | 50662..51252 | - | 591 | WP_157770372.1 | hypothetical protein | - |
| MKLM6_RS22250 () | 51224..51556 | - | 333 | WP_198402822.1 | AHH domain-containing protein | - |
| MKLM6_RS22255 () | 51736..55529 | - | 3794 | Protein_58 | RHS repeat protein | - |
| MKLM6_RS22260 () | 55630..56250 | + | 621 | WP_096876848.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| MKLM6_RS22265 () | 56254..56490 | + | 237 | WP_096876849.1 | WGR domain-containing protein | - |
| MKLM6_RS22270 () | 56627..56842 | + | 216 | WP_096876850.1 | helix-turn-helix domain-containing protein | - |
| MKLM6_RS22275 () | 56839..57447 | + | 609 | WP_096876851.1 | DUF1819 family protein | - |
| MKLM6_RS22280 () | 57471..58061 | + | 591 | WP_096876852.1 | DUF1788 domain-containing protein | - |
| MKLM6_RS22285 () | 58076..61618 | + | 3543 | WP_096876853.1 | BREX system P-loop protein BrxC | - |
| MKLM6_RS22290 () | 61615..62733 | + | 1119 | WP_096876854.1 | ATP-binding protein | - |
| MKLM6_RS22295 () | 62733..63230 | + | 498 | WP_096876855.1 | hypothetical protein | - |
| MKLM6_RS22300 () | 63230..66718 | + | 3489 | WP_157770373.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| MKLM6_RS22305 () | 66722..67879 | + | 1158 | WP_096876856.1 | DUF1016 family protein | - |
| MKLM6_RS22310 () | 67872..70421 | + | 2550 | WP_096876857.1 | BREX-1 system phosphatase PglZ type A | - |
| MKLM6_RS22315 () | 70434..72533 | + | 2100 | WP_096876858.1 | BREX system Lon protease-like protein BrxL | - |
| MKLM6_RS22320 () | 72666..73922 | + | 1257 | WP_096876859.1 | DNA repair exonuclease | - |
| MKLM6_RS22325 () | 73925..77383 | + | 3459 | WP_096876860.1 | YhaN family protein | - |
| MKLM6_RS22330 () | 77441..80053 | + | 2613 | WP_096876930.1 | AAA family ATPase | - |
| MKLM6_RS22335 () | 80279..80427 | - | 149 | Protein_74 | cold shock domain-containing protein | - |
| MKLM6_RS22340 () | 80676..80909 | + | 234 | WP_096876861.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| MKLM6_RS22345 () | 80896..81312 | + | 417 | WP_096876862.1 | PIN domain-containing protein | Toxin Detail |
| MKLM6_RS22350 () | 81508..82545 | - | 1038 | WP_157770374.1 | hypothetical protein | - |
| MKLM6_RS22355 () | 82517..83929 | - | 1413 | WP_096876864.1 | Peptidoglycan O-acetyltransferase | VF |
| MKLM6_RS22360 () | 83946..84308 | - | 363 | WP_096876865.1 | hypothetical protein | - |
| MKLM6_RS22365 () | 84305..84796 | - | 492 | WP_096876866.1 | thermonuclease family protein | - |
| MKLM6_RS22370 () | 84811..85443 | - | 633 | WP_096876867.1 | DUF4400 domain-containing protein | - |
| MKLM6_RS22375 () | 85446..85844 | - | 399 | WP_157770375.1 | hypothetical protein | - |
| MKLM6_RS22380 () | 85822..87666 | - | 1845 | WP_054759902.1 | conjugative transfer system coupling protein TraD | - |
| MKLM6_RS22385 () | 87666..89753 | - | 2088 | WP_096876869.1 | hypothetical protein | Relaxase |
| MKLM6_RS22390 () | 89769..90218 | - | 450 | WP_198402823.1 | hypothetical protein | - |
| MKLM6_RS22395 () | 91623..92333 | + | 711 | WP_096876870.1 | hypothetical protein | - |
| MKLM6_RS22400 () | 92455..92865 | + | 411 | WP_096876871.1 | hypothetical protein | - |
| MKLM6_RS22405 () | 93151..93747 | + | 597 | WP_096876872.1 | hypothetical protein | - |
| MKLM6_RS22410 () | 94030..94266 | + | 237 | WP_096876873.1 | hypothetical protein | - |
| MKLM6_RS22415 () | 94789..96315 | - | 1527 | WP_198402810.1 | hypothetical protein | - |
| MKLM6_RS23685 () | 96655..96825 | + | 171 | WP_198402811.1 | hypothetical protein | - |
| MKLM6_RS22420 () | 97011..97889 | - | 879 | WP_096876875.1 | transglutaminase domain-containing protein | - |
| MKLM6_RS22425 () | 97886..98752 | - | 867 | WP_198402812.1 | rhodanese-like domain-containing protein | - |
| MKLM6_RS22430 () | 98922..99472 | - | 551 | Protein_94 | transposase | - |
| MKLM6_RS22435 () | 99674..113620 | - | 13947 | WP_198402813.1 | right-handed parallel beta-helix repeat-containing protein | - |
| MKLM6_RS22440 () | 113832..114422 | - | 591 | WP_157770378.1 | cohesin domain-containing protein | - |
| MKLM6_RS22445 () | 114477..117026 | - | 2550 | WP_096876879.1 | hypothetical protein | VF |
| MKLM6_RS23315 () | 117051..118091 | - | 1041 | WP_157770379.1 | hypothetical protein | - |
| MKLM6_RS22455 () | 118750..119757 | - | 1008 | WP_096876880.1 | hypothetical protein | - |
| MKLM6_RS22460 () | 119899..120873 | + | 975 | WP_198402824.1 | ParM/StbA family protein | - |
| MKLM6_RS23690 () | 120876..121109 | + | 234 | WP_198402814.1 | hypothetical protein | - |
| MKLM6_RS22465 () | 121441..122538 | - | 1098 | WP_096875772.1 | IS5 family transposase ISPst12 | Transposase |
| MKLM6_RS22470 () | 122713..123078 | + | 366 | WP_157770380.1 | hypothetical protein | VF |
| MKLM6_RS22475 () | 123081..123359 | + | 279 | WP_064023741.1 | flagellar transcriptional regulator FlhD | - |
| MKLM6_RS22480 () | 123366..123869 | + | 504 | WP_082881133.1 | hypothetical protein | - |
| MKLM6_RS23695 () | 123869..124141 | + | 273 | WP_198402815.1 | hypothetical protein | - |
| MKLM6_RS22485 () | 124168..127845 | - | 3678 | WP_096876883.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| MKLM6_RS22490 () | 127842..129290 | - | 1449 | WP_096876884.1 | conjugal transfer protein TraH | - |
| MKLM6_RS22495 () | 129324..130301 | - | 978 | WP_157770381.1 | conjugal transfer protein TraF | - |
| MKLM6_RS22500 () | 130380..130907 | + | 528 | WP_096876886.1 | hypothetical protein | - |
| MKLM6_RS22505 () | 131041..131991 | - | 951 | WP_096876887.1 | S49 family peptidase | - |
| MKLM6_RS22510 () | 131997..133016 | - | 1020 | WP_157770382.1 | hypothetical protein | - |
| MKLM6_RS22515 () | 133028..135826 | - | 2799 | WP_096876889.1 | conjugal transfer mating pair stabilization protein TraN | - |
| MKLM6_RS22520 () | 135828..136892 | - | 1065 | WP_064023749.1 | TraU family protein | - |
| MKLM6_RS22525 () | 136885..138051 | - | 1167 | WP_096876890.1 | conjugal transfer protein | - |
| MKLM6_RS22530 () | 138035..138562 | - | 528 | WP_096876891.1 | S26 family signal peptidase | - |
| MKLM6_RS22535 () | 138549..138854 | - | 306 | WP_096876892.1 | hypothetical protein | - |
| MKLM6_RS22540 () | 138844..141243 | - | 2400 | WP_096876893.1 | type IV secretion system protein TraC | - |
| MKLM6_RS22545 () | 141236..141424 | - | 189 | WP_096876894.1 | RRXRR domain-containing protein | - |
| MKLM6_RS22550 () | 141551..141853 | - | 303 | WP_096876931.1 | pili assembly chaperone | - |
| MKLM6_RS22555 () | 141976..142530 | - | 555 | WP_140912016.1 | TraV family lipoprotein | - |
| MKLM6_RS22560 () | 142541..143305 | - | 765 | WP_198402816.1 | DsbC family protein | - |
| MKLM6_RS22565 () | 143324..144652 | - | 1329 | WP_096876897.1 | TraB/VirB10 family protein | - |
| MKLM6_RS22570 () | 144662..145540 | - | 879 | WP_096876898.1 | type-F conjugative transfer system secretin TraK | - |
| MKLM6_RS22575 () | 145527..146144 | - | 618 | WP_096876899.1 | TraE protein | - |
| MKLM6_RS22580 () | 146141..146422 | - | 282 | WP_054759564.1 | type IV conjugative transfer system protein TraL | - |
| MKLM6_RS22590 () | 146809..147096 | - | 288 | WP_157770383.1 | IS3 family transposase ISRj2 | Transposase |
| MKLM6_RS22595 () | 147473..148084 | - | 612 | WP_096876902.1 | hypothetical protein | - |
| MKLM6_RS22600 () | 148071..148577 | - | 507 | WP_096876903.1 | exosortase family protein XrtM | - |
| MKLM6_RS22610 () | 148932..149540 | - | 609 | WP_157770384.1 | hypothetical protein | - |
| MKLM6_RS22615 () | 149554..152256 | - | 2703 | WP_096876905.1 | RHS repeat-associated core domain-containing protein | - |
| MKLM6_RS22620 () | 152406..152888 | - | 483 | WP_157198346.1 | hypothetical protein | - |
| MKLM6_RS22625 () | 152898..158618 | - | 5721 | WP_096876906.1 | hypothetical protein | - |
| MKLM6_RS22630 () | 158623..159078 | - | 456 | WP_198402817.1 | hypothetical protein | - |
| MKLM6_RS22635 () | 159753..160379 | + | 627 | WP_096876932.1 | IS91 family transposase ISMno24 | Transposase |
| MKLM6_RS22640 () | 160631..161140 | - | 510 | WP_096876908.1 | DUF1993 domain-containing protein | - |
| MKLM6_RS22645 () | 161277..161903 | + | 627 | WP_096876909.1 | plasmid pRiA4b ORF-3 family protein | - |
| MKLM6_RS22650 () | 161903..162337 | + | 435 | WP_096876910.1 | hypothetical protein | - |
| MKLM6_RS22655 () | 162547..163587 | - | 1041 | Protein_139 | Y-family DNA polymerase | - |
| MKLM6_RS22660 () | 163944..164837 | - | 894 | WP_096876933.1 | poly(3-hydroxybutyrate) depolymerase | - |
| MKLM6_RS22665 () | 164883..165380 | - | 498 | Protein_141 | hypothetical protein | - |
| MKLM6_RS22670 () | 165528..165854 | - | 327 | WP_096876911.1 | EthD family reductase | - |
| MKLM6_RS22675 () | 165974..166849 | + | 876 | WP_096876912.1 | Hydrogen peroxide-inducible genes activator | VF |
| MKLM6_RS22680 () | 167128..167706 | - | 579 | WP_096876913.1 | DUF1211 domain-containing protein | - |
| MKLM6_RS22685 () | 168143..169453 | - | 1311 | WP_096876914.1 | Y-family DNA polymerase | - |
| MKLM6_RS22690 () | 169526..171709 | - | 2184 | WP_096876915.1 | tyrosine-type recombinase/integrase | - |
| MKLM6_RS22695 () | 171716..172744 | - | 1029 | WP_096876916.1 | site-specific integrase | - |
| MKLM6_RS22700 () | 172823..173050 | - | 228 | Protein_148 | DNA polymerase V subunit UmuC | - |
| MKLM6_RS22705 () | 173077..173562 | - | 486 | WP_096876934.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MKLM6_RS22710 () | 173650..173913 | + | 264 | WP_096876917.1 | SOS response-associated peptidase family protein | - |
| MKLM6_RS22715 () | 173910..174818 | - | 909 | WP_157770352.1 | IS3 family transposase ISPa133 | Transposase |
| MKLM6_RS22720 () | 174776..175090 | - | 315 | WP_096875707.1 | IS3 family transposase ISAma1 | Transposase |
| MKLM6_RS22725 () | 175157..175585 | + | 429 | WP_096876918.1 | SOS response-associated peptidase | - |
| MKLM6_RS22730 () | 175772..175984 | + | 213 | WP_096876919.1 | hypothetical protein | - |
| MKLM6_RS23320 () | 176473..176622 | + | 150 | WP_157198352.1 | hypothetical protein | - |
| MKLM6_RS22740 () | 179720..180814 | - | 1095 | WP_157770386.1 | hypothetical protein | - |
| MKLM6_RS22745 () | 180999..181907 | + | 909 | WP_096876921.1 | ParA family protein | - |
| MKLM6_RS22750 () | 181904..182959 | + | 1056 | WP_096876922.1 | hypothetical protein | - |
| MKLM6_RS22755 () | 182952..183335 | + | 384 | WP_096876923.1 | hypothetical protein | - |
| MKLM6_RS22760 () | 183836..184018 | + | 183 | Protein_160 | IS66 family transposase ISRm2 | Transposase |
| MKLM6_RS22770 () | 185761..186561 | + | 801 | WP_096876924.1 | retroviral-like aspartic protease family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|