MGE detailed information
MGE type: Genomic_island MGE length: 26521 bp
Accession: NZ_CP023661 Location: 2820040..2846560 Organism: Xanthomonas citri pv. citri strain Xcc29-1 Replicon: chromosome
Accession: NZ_CP023661 Location: 2820040..2846560 Organism: Xanthomonas citri pv. citri strain Xcc29-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COR42_RS12890 () | 2816962..2817138 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| COR42_RS12895 () | 2817358..2817759 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| COR42_RS12905 () | 2818048..2819139 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| COR42_RS12915 () | 2820040..2822211 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| COR42_RS12920 () | 2822221..2822742 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| COR42_RS24380 () | 2823607..2824563 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| COR42_RS12935 () | 2824630..2825763 | - | 1134 | Protein_2405 | IS5 family transposase ISXo4 | Transposase |
| COR42_RS12940 () | 2825803..2826890 | - | 1088 | Protein_2406 | IS3 family transposase ISXcd1 | Transposase |
| COR42_RS12945 () | 2827103..2827282 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| COR42_RS12950 () | 2827553..2827867 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| COR42_RS12955 () | 2827870..2828160 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| COR42_RS12960 () | 2828148..2828426 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| COR42_RS12965 () | 2828596..2829864 | - | 1269 | Protein_2411 | Tn3 family transposase ISPsy42 | Transposase |
| COR42_RS12970 () | 2829913..2831138 | + | 1226 | Protein_2412 | IS3 family transposase ISJsp1 | Transposase |
| COR42_RS12975 () | 2831757..2832713 | + | 957 | WP_015463313.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| COR42_RS12980 () | 2832903..2835011 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| COR42_RS12985 () | 2835062..2835250 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| COR42_RS12990 () | 2835247..2836833 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| COR42_RS12995 () | 2836830..2837747 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| COR42_RS13000 () | 2837756..2838085 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| COR42_RS13005 () | 2838189..2838599 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| COR42_RS24385 () | 2838622..2838798 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| COR42_RS13015 () | 2838991..2839191 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| COR42_RS13020 () | 2839752..2840012 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| COR42_RS13025 () | 2840411..2841412 | - | 1002 | WP_011051588.1 | replication protein | - |
| COR42_RS13030 () | 2841644..2841877 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| COR42_RS13035 () | 2842456..2843850 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| COR42_RS13040 () | 2843847..2845964 | + | 2118 | WP_015463321.1 | ATP-binding protein | - |
| COR42_RS24185 () | 2846384..2846560 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| COR42_RS13045 () | 2846843..2847949 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| COR42_RS13050 () | 2847992..2848501 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| COR42_RS13055 () | 2848513..2850171 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| COR42_RS13060 () | 2850482..2851087 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0.001 |