MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 99153 bp
Accession: NZ_CP023287 Location: 1..99153 Organism: Xanthomonas citri pv. citri strain 03-1638-1-1 Replicon: plasmid pP2
Accession: NZ_CP023287 Location: 1..99153 Organism: Xanthomonas citri pv. citri strain 03-1638-1-1 Replicon: plasmid pP2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLM98_RS24490 () | 1..1226 | + | 1226 | Protein_0 | replication protein | - |
| CLM98_RS24500 () | 2031..2798 | + | 768 | WP_011052998.1 | ParA family protein | - |
| CLM98_RS24505 () | 2812..3843 | + | 1032 | WP_011052997.1 | ParB/RepB/Spo0J family partition protein | - |
| CLM98_RS24510 () | 3895..4224 | + | 330 | WP_011052996.1 | partition gene repressor | - |
| CLM98_RS24515 () | 4228..4464 | + | 237 | WP_015462622.1 | Wgr family protein | - |
| CLM98_RS24520 () | 4579..5665 | + | 1087 | Protein_5 | IS3 family transposase ISXac2 | Transposase |
| CLM98_RS25530 () | 5830..6045 | - | 216 | WP_155400515.1 | hypothetical protein | - |
| CLM98_RS24530 () | 6358..6648 | + | 291 | WP_003490957.1 | hypothetical protein | - |
| CLM98_RS24535 () | 6669..7046 | + | 378 | WP_011052992.1 | TrbC/VirB2 family protein | - |
| CLM98_RS24540 () | 7043..7342 | + | 300 | WP_003490875.1 | VirB3 family type IV secretion system protein | - |
| CLM98_RS24545 () | 7365..9998 | + | 2634 | WP_011052991.1 | Type IV secretion system protein virB4 | VF |
| CLM98_RS24550 () | 9995..10663 | + | 669 | WP_015462618.1 | VirB5 protein | - |
| CLM98_RS24555 () | 10711..10923 | + | 213 | WP_015462617.1 | hypothetical protein | - |
| CLM98_RS24560 () | 10916..11296 | + | 381 | WP_015462616.1 | hypothetical protein | - |
| CLM98_RS24565 () | 11298..12164 | + | 867 | WP_011052987.1 | type IV secretion system protein | - |
| CLM98_RS24570 () | 12161..12835 | + | 675 | WP_011052986.1 | type IV secretion system protein | - |
| CLM98_RS24575 () | 12860..13642 | + | 783 | WP_011052985.1 | Type IV secretion system protein virB9 | VF |
| CLM98_RS24580 () | 13644..14864 | + | 1221 | WP_011052984.1 | Type IV secretion system protein virB10 | VF |
| CLM98_RS24585 () | 14875..15897 | + | 1023 | WP_011052983.1 | Type IV secretion system protein VirB11 | VF |
| CLM98_RS24590 () | 15908..16786 | + | 879 | WP_011052982.1 | Type IV secretion system protein virB1 | VF |
| CLM98_RS24595 () | 16912..17331 | + | 420 | WP_011052981.1 | hypothetical protein | - |
| CLM98_RS24600 () | 17408..17794 | + | 387 | WP_003491149.1 | hypothetical protein | - |
| CLM98_RS24605 () | 17931..18149 | + | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| CLM98_RS24610 () | 18146..18472 | + | 327 | WP_015462614.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| CLM98_RS24615 () | 18526..21501 | - | 2976 | WP_011052978.1 | Multifunctional conjugation protein TraI | Relaxase |
| CLM98_RS24620 () | 21515..23089 | - | 1575 | WP_011052977.1 | type IV secretion system DNA-binding domain-containing protein | - |
| CLM98_RS24625 () | 23348..23689 | - | 342 | WP_031425612.1 | hypothetical protein | - |
| CLM98_RS24630 () | 23888..24238 | - | 351 | WP_015462612.1 | hypothetical protein | - |
| CLM98_RS24640 () | 24529..24801 | + | 273 | WP_005934628.1 | hypothetical protein | - |
| CLM98_RS25790 () | 24943..25116 | - | 174 | WP_011052974.1 | hypothetical protein | - |
| CLM98_RS24645 () | 25116..25511 | - | 396 | WP_011052973.1 | hypothetical protein | - |
| CLM98_RS24650 () | 25859..26305 | + | 447 | WP_011052937.1 | hypothetical protein | - |
| CLM98_RS24655 () | 26302..27011 | + | 710 | Protein_32 | plasmid stabilization protein | - |
| CLM98_RS24660 () | 27060..27413 | + | 354 | WP_039700904.1 | hypothetical protein | - |
| CLM98_RS24665 () | 27808..28017 | - | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| CLM98_RS24670 () | 28014..28322 | - | 309 | WP_015462607.1 | hypothetical protein | - |
| CLM98_RS24675 () | 28778..29404 | + | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| CLM98_RS24680 () | 29401..29724 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| CLM98_RS24685 () | 29869..30183 | + | 315 | WP_005918227.1 | hypothetical protein | - |
| CLM98_RS24690 () | 30431..31651 | + | 1221 | WP_011052942.1 | replication initiation protein | - |
| CLM98_RS24695 () | 32017..35904 | - | 3888 | WP_075150221.1 | TAL effector repeat-containing protein | - |
| CLM98_RS25535 () | 36150..36371 | - | 222 | WP_011052944.1 | hypothetical protein | - |
| CLM98_RS24715 () | 36661..37197 | - | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| CLM98_RS24720 () | 37187..37399 | - | 213 | WP_011052947.1 | hypothetical protein | - |
| CLM98_RS25380 () | 37396..37647 | - | 252 | WP_125459571.1 | hypothetical protein | - |
| CLM98_RS24725 () | 37670..38002 | - | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| CLM98_RS24730 () | 38002..38259 | - | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| CLM98_RS24735 () | 38465..39067 | + | 603 | WP_011052950.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| CLM98_RS24740 () | 39051..39355 | + | 305 | Protein_48 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| CLM98_RS24745 () | 39522..39728 | - | 207 | Protein_49 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| CLM98_RS24750 () | 39773..40342 | - | 570 | Protein_50 | UPF0149 family protein | - |
| CLM98_RS24755 () | 40361..41575 | - | 1215 | WP_011050083.1 | IS4 family transposase ISXac1 | Transposase |
| CLM98_RS24760 () | 41649..41831 | - | 183 | Protein_52 | UPF0149 family protein | - |
| CLM98_RS24765 () | 41850..44825 | - | 2976 | Protein_53 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| CLM98_RS24770 () | 44830..45249 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| CLM98_RS24775 () | 45249..45488 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| CLM98_RS24780 () | 45702..46625 | + | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| CLM98_RS24785 () | 46669..46851 | + | 183 | Protein_57 | helix-turn-helix domain-containing protein | - |
| CLM98_RS24790 () | 46982..47398 | - | 417 | WP_087962480.1 | transposase | - |
| CLM98_RS25385 () | 47452..47658 | - | 207 | WP_011052961.1 | hypothetical protein | - |
| CLM98_RS24795 () | 47708..48037 | - | 330 | WP_005918642.1 | hypothetical protein | - |
| CLM98_RS24800 () | 48184..48783 | + | 600 | WP_015462601.1 | hypothetical protein | - |
| CLM98_RS24805 () | 49110..49559 | + | 450 | WP_015462602.1 | hypothetical protein | - |
| CLM98_RS24810 () | 49556..50161 | + | 606 | WP_011052963.1 | M48 family metalloprotease | - |
| CLM98_RS24815 () | 50158..50700 | + | 543 | WP_011052965.1 | hypothetical protein | - |
| CLM98_RS24820 () | 50780..51124 | - | 345 | WP_075150220.1 | hypothetical protein | - |
| CLM98_RS24825 () | 51167..52444 | - | 1278 | WP_011052966.1 | lytic murein transglycosylase | - |
| CLM98_RS24830 () | 52577..55567 | - | 2991 | WP_011052967.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| CLM98_RS24835 () | 55575..56849 | - | 1275 | WP_011052968.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| CLM98_RS24840 () | 57041..58096 | + | 1056 | WP_011052969.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| CLM98_RS24850 () | 58229..59305 | + | 1077 | WP_040107542.1 | hypothetical protein | - |
| CLM98_RS24885 () | 61863..65153 | + | 3291 | WP_104948402.1 | TAL effector repeat-containing protein | - |
| CLM98_RS24890 () | 65519..66739 | - | 1221 | WP_011052942.1 | replication initiation protein | - |
| CLM98_RS24895 () | 66987..67301 | - | 315 | WP_005918227.1 | hypothetical protein | - |
| CLM98_RS24900 () | 67446..67769 | - | 324 | WP_005918229.1 | hypothetical protein | - |
| CLM98_RS24905 () | 67766..68392 | - | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| CLM98_RS24910 () | 68848..69156 | + | 309 | WP_015462607.1 | hypothetical protein | - |
| CLM98_RS24915 () | 69153..69362 | + | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| CLM98_RS24920 () | 69757..70110 | - | 354 | WP_039700904.1 | hypothetical protein | - |
| CLM98_RS24925 () | 70159..70868 | - | 710 | Protein_80 | plasmid stabilization protein | - |
| CLM98_RS24930 () | 70865..71311 | - | 447 | WP_011052937.1 | hypothetical protein | - |
| CLM98_RS24935 () | 71659..72054 | + | 396 | WP_011052973.1 | hypothetical protein | - |
| CLM98_RS25795 () | 72054..72227 | + | 174 | WP_011052974.1 | hypothetical protein | - |
| CLM98_RS24940 () | 72369..72641 | - | 273 | WP_005934628.1 | hypothetical protein | - |
| CLM98_RS24945 () | 72754..72999 | + | 246 | Protein_85 | IS3 family transposase | - |
| CLM98_RS24950 () | 73058..73435 | + | 378 | WP_004666662.1 | hypothetical protein | - |
| CLM98_RS24960 () | 73596..73991 | - | 396 | WP_015463818.1 | type II toxin-antitoxin system VapC family toxin | - |
| CLM98_RS24965 () | 73988..74239 | - | 252 | WP_003108276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CLM98_RS24970 () | 74419..75048 | + | 630 | WP_011052932.1 | Tn3 family transposase ISPsy42 | Transposase |
| CLM98_RS25545 () | 76150..76314 | - | 165 | WP_155400514.1 | hypothetical protein | - |
| CLM98_RS24990 () | 76954..77775 | + | 822 | WP_011052929.1 | hypothetical protein | - |
| CLM98_RS24995 () | 78410..79147 | + | 738 | WP_011052960.1 | DNA-binding protein | - |
| CLM98_RS25000 () | 79230..79859 | + | 630 | WP_015463817.1 | AAA family ATPase | - |
| CLM98_RS25005 () | 79856..80092 | + | 237 | WP_015463816.1 | hypothetical protein | - |
| CLM98_RS25015 () | 81346..84636 | + | 3291 | WP_075702001.1 | TAL effector repeat-containing protein | - |
| CLM98_RS25020 () | 84755..85678 | - | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| CLM98_RS25025 () | 85892..86131 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| CLM98_RS25030 () | 86131..86550 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| CLM98_RS25035 () | 86555..89497 | + | 2943 | Protein_100 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| CLM98_RS25040 () | 89499..89993 | + | 495 | Protein_101 | UPF0149 family protein | - |
| CLM98_RS25045 () | 90038..90184 | + | 147 | Protein_102 | transposase | - |
| CLM98_RS25050 () | 90283..93774 | - | 3492 | WP_011053008.1 | TAL effector repeat-containing protein | - |
| CLM98_RS25070 () | 95342..95937 | + | 596 | Protein_104 | IS3 family transposase ISXac3 | Transposase |
| CLM98_RS25075 () | 95968..96541 | - | 574 | Protein_105 | Tn3 family transposase ISPsy42 | Transposase |
| CLM98_RS25085 () | 96991..97392 | + | 402 | Protein_106 | type II toxin-antitoxin system VapC family toxin | - |
| CLM98_RS25090 () | 97417..97680 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| CLM98_RS25095 () | 97687..98874 | + | 1188 | WP_011053001.1 | zeta toxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|