Detailed information of TA system TA080709

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mazEF/PemK-MazE
• Location: 17931..18472
• Replicon: plasmid pP2
• Accession: NZ_CP023287
• Organism: Xanthomonas citri pv. citri strain 03-1638-1-1

Toxin (Protein)

• Gene name: mazF
• Uniprot ID: -
• Locus tag: CLM98_RS24610
• Protein ID: WP_015462614.1
• Coordinates: 18146..18472 (+)
• Length: 109 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: H8FMA7
• Locus tag: CLM98_RS24605
• Protein ID: WP_003491150.1
• Coordinates: 17931..18149 (+)
• Length: 73 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CLM98_RS24580	13644..14864	+	1221	WP_011052984.1	TrbI/VirB10 family protein	-
CLM98_RS24585	14875..15897	+	1023	WP_011052983.1	P-type DNA transfer ATPase VirB11	-
CLM98_RS24590	15908..16786	+	879	WP_011052982.1	transglycosylase SLT domain-containing protein	-
CLM98_RS24595	16912..17331	+	420	WP_011052981.1	hypothetical protein	-
CLM98_RS24600	17408..17794	+	387	WP_003491149.1	hypothetical protein	-
CLM98_RS24605	17931..18149	+	219	WP_003491150.1	antitoxin MazE family protein	Antitoxin
CLM98_RS24610	18146..18472	+	327	WP_015462614.1	type II toxin-antitoxin system PemK/MazF family toxin	Toxin
CLM98_RS24615	18526..21501	-	2976	WP_011052978.1	conjugative relaxase	-
CLM98_RS24620	21515..23089	-	1575	WP_011052977.1	type IV secretion system DNA-binding domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..99153	99153

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase PemK-like (3-103)

Antitoxin

• Antitoxin MazE-like (5-70)

Sequences

Toxin

Protein

• Length: 109 a.a.
• Molecular weight: 11676.70 Da
• Isoelectric Point: 9.2550

>T80709 WP_015462614.1 NZ_CP023287:18146-18472 [Xanthomonas citri pv. citri]
MMRGDFVTIAMQGDFGKPRPALVIQADQFDAHTTVTVLPVTSTLVAAPLLRITVHPSTDNGLQKPSQVMVDKAMTVKRDK
VGRAFGRVDADALVEIERCLAVFLGIAK

Nucleotide

• Length: 327 bp

>T80709 NZ_CP023287:18146-18472 [Xanthomonas citri pv. citri]
ATGATGCGGGGTGACTTTGTGACCATCGCCATGCAAGGCGACTTCGGAAAACCAAGGCCCGCTCTGGTGATCCAGGCCGA
CCAGTTTGACGCACACACCACCGTGACGGTGCTGCCGGTGACAAGCACGCTCGTTGCTGCGCCGCTGCTGCGTATTACCG
TTCATCCAAGTACCGACAATGGTTTGCAGAAGCCGTCTCAGGTGATGGTGGACAAGGCCATGACCGTGAAGCGTGACAAG
GTAGGTCGAGCCTTTGGGCGCGTAGACGCTGATGCGTTGGTGGAAATTGAGCGCTGCCTGGCCGTGTTCTTGGGCATCGC
TAAGTGA

Antitoxin

Protein

• Length: 73 a.a.
• Molecular weight: 8418.54 Da
• Isoelectric Point: 5.6599

>AT80709 WP_003491150.1 NZ_CP023287:17931-18149 [Xanthomonas citri pv. citri]
MAHVNSRVQKHRDALRMAGLRPVQIWVPDTRRPDFAEECRRQCRLAAQADMADTDMQRFMDEALADMDGWTE

Nucleotide

• Length: 219 bp

>AT80709 NZ_CP023287:17931-18149 [Xanthomonas citri pv. citri]
ATGGCACACGTCAATTCACGAGTTCAAAAGCACCGCGACGCCCTGCGCATGGCAGGGCTGCGTCCGGTGCAAATTTGGGT
GCCGGACACACGGCGGCCTGACTTCGCCGAGGAATGCCGCCGTCAGTGTCGTCTTGCTGCACAAGCGGACATGGCGGATA
CCGACATGCAGCGCTTCATGGATGAGGCGCTAGCAGACATGGATGGCTGGACGGAATGA

Structures

Antitoxin

• AlphaFold DB: H8FMA7