MGE detailed information
MGE type: Prophage MGE length: 59420 bp
Accession: NZ_CP022906 Location: 1541317..1600736 Organism: Staphylococcus aureus strain 546 Replicon: chromosome
Accession: NZ_CP022906 Location: 1541317..1600736 Organism: Staphylococcus aureus strain 546 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGP99_RS07765 () | 1536689..1536937 | + | 249 | WP_001151997.1 | ferredoxin | - |
| CGP99_RS07770 () | 1537043..1537588 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| CGP99_RS07775 () | 1537867..1537986 | - | 120 | WP_001789947.1 | hypothetical protein | - |
| CGP99_RS07780 () | 1538185..1539099 | - | 915 | WP_000913219.1 | DUF1672 domain-containing protein | - |
| CGP99_RS07785 () | 1539114..1539320 | - | 207 | WP_001033757.1 | hypothetical protein | - |
| CGP99_RS07790 () | 1539313..1540251 | - | 939 | WP_000472936.1 | DUF1672 domain-containing protein | - |
| CGP99_RS07795 () | 1540309..1541226 | - | 918 | WP_000476873.1 | DUF1672 domain-containing protein | - |
| CGP99_RS15515 () | 1541317..1541532 | - | 216 | WP_170267452.1 | hypothetical protein | - |
| CGP99_RS07805 () | 1541715..1542398 | - | 684 | WP_000180531.1 | hypothetical protein | - |
| CGP99_RS07810 () | 1542395..1542577 | - | 183 | WP_000990948.1 | hypothetical protein | - |
| CGP99_RS07815 () | 1542800..1543724 | - | 925 | Protein_1457 | hypothetical protein | - |
| CGP99_RS07825 () | 1544343..1545797 | - | 1455 | WP_031924639.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CGP99_RS07830 () | 1545808..1546110 | - | 303 | WP_000339141.1 | phage holin | - |
| CGP99_RS07835 () | 1546246..1546545 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| CGP99_RS07840 () | 1546591..1546755 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| CGP99_RS07845 () | 1546748..1547137 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| CGP99_RS07850 () | 1547137..1548603 | - | 1467 | WP_115276633.1 | BppU family phage baseplate upper protein | - |
| CGP99_RS07855 () | 1548603..1550513 | - | 1911 | WP_000429558.1 | minor structural protein | - |
| CGP99_RS07860 () | 1550529..1550819 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| CGP99_RS07865 () | 1550819..1552402 | - | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| CGP99_RS07870 () | 1552411..1553235 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| CGP99_RS07875 () | 1553235..1559435 | - | 6201 | WP_031860857.1 | phage tail tape measure protein | - |
| CGP99_RS07880 () | 1559449..1559607 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| CGP99_RS07885 () | 1559649..1559999 | - | 351 | WP_000589167.1 | hypothetical protein | - |
| CGP99_RS07890 () | 1560057..1560512 | - | 456 | WP_000169127.1 | Ig domain-containing protein | - |
| CGP99_RS07895 () | 1560604..1561245 | - | 642 | WP_000807536.1 | tail protein | - |
| CGP99_RS07900 () | 1561280..1561675 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| CGP99_RS07905 () | 1561676..1562077 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| CGP99_RS07910 () | 1562074..1562406 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| CGP99_RS07915 () | 1562418..1562696 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| CGP99_RS07920 () | 1562765..1563928 | - | 1164 | WP_001142739.1 | phage major capsid protein | - |
| CGP99_RS07925 () | 1563940..1564713 | - | 774 | WP_115276634.1 | Clp protease ClpP | - |
| CGP99_RS07930 () | 1564697..1565935 | - | 1239 | WP_001100669.1 | phage portal protein | - |
| CGP99_RS07935 () | 1565940..1567631 | - | 1692 | WP_115276635.1 | terminase large subunit | - |
| CGP99_RS07940 () | 1567621..1567926 | - | 306 | WP_000778932.1 | P27 family phage terminase small subunit | - |
| CGP99_RS07945 () | 1568055..1568369 | - | 315 | WP_015978060.1 | HNH endonuclease | - |
| CGP99_RS07950 () | 1568526..1568963 | - | 438 | WP_031883903.1 | transcriptional regulator | - |
| CGP99_RS07955 () | 1568976..1570343 | - | 1368 | WP_115276636.1 | DEAD/DEAH box helicase | - |
| CGP99_RS07960 () | 1570324..1570614 | - | 291 | WP_000665205.1 | VRR-NUC domain-containing protein | - |
| CGP99_RS07965 () | 1570748..1570852 | + | 105 | WP_015978074.1 | hypothetical protein | - |
| CGP99_RS07970 () | 1570955..1573402 | - | 2448 | WP_115276637.1 | virulence-associated E family protein | - |
| CGP99_RS07975 () | 1573455..1573655 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| CGP99_RS07980 () | 1573723..1573875 | - | 153 | WP_000595237.1 | transcriptional activator RinB | - |
| CGP99_RS07985 () | 1573868..1574104 | - | 237 | WP_000483477.1 | hypothetical protein | - |
| CGP99_RS07990 () | 1574129..1574365 | - | 237 | WP_000195806.1 | DUF1381 domain-containing protein | - |
| CGP99_RS07995 () | 1574402..1574938 | - | 537 | WP_000185703.1 | dUTPase | - |
| CGP99_RS08000 () | 1574931..1575113 | - | 183 | WP_000028425.1 | hypothetical protein | Antitoxin Detail |
| CGP99_RS08005 () | 1575103..1575354 | - | 252 | WP_001065110.1 | DUF1024 family protein | Toxin Detail |
| CGP99_RS08010 () | 1575369..1575611 | - | 243 | WP_000132193.1 | hypothetical protein | - |
| CGP99_RS08015 () | 1575626..1575826 | - | 201 | WP_000235324.1 | hypothetical protein | - |
| CGP99_RS08020 () | 1575829..1576086 | - | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| CGP99_RS08025 () | 1576086..1576487 | - | 402 | WP_031776133.1 | phage DNA polymerase | - |
| CGP99_RS08030 () | 1576487..1576672 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| CGP99_RS08035 () | 1576685..1578637 | - | 1953 | WP_001802096.1 | DNA polymerase | - |
| CGP99_RS08040 () | 1578705..1579262 | - | 558 | WP_000645045.1 | DUF2815 family protein | - |
| CGP99_RS08045 () | 1579288..1580454 | - | 1167 | WP_115276638.1 | DUF2800 domain-containing protein | - |
| CGP99_RS08050 () | 1580451..1580813 | - | 363 | WP_031857745.1 | hypothetical protein | - |
| CGP99_RS08055 () | 1580828..1581151 | - | 324 | WP_000174994.1 | hypothetical protein | - |
| CGP99_RS08060 () | 1581230..1581391 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| CGP99_RS08065 () | 1581404..1581667 | - | 264 | WP_001124160.1 | IS3 family transposase ISVa4 | Transposase |
| CGP99_RS08070 () | 1581692..1581907 | - | 216 | WP_031867168.1 | hypothetical protein | - |
| CGP99_RS08075 () | 1581962..1582327 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| CGP99_RS08080 () | 1582296..1582541 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| CGP99_RS08085 () | 1582591..1582809 | - | 219 | WP_001001383.1 | hypothetical protein | - |
| CGP99_RS08090 () | 1582825..1583601 | - | 777 | WP_001148559.1 | phage antirepressor | - |
| CGP99_RS08095 () | 1583627..1583854 | - | 228 | WP_001030311.1 | hypothetical protein | - |
| CGP99_RS08100 () | 1584026..1584640 | + | 615 | WP_000801423.1 | XRE family transcriptional regulator | - |
| CGP99_RS08105 () | 1584656..1585576 | + | 921 | WP_000348133.1 | 3'-5' exoribonuclease | - |
| CGP99_RS08110 () | 1585673..1585855 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| CGP99_RS08115 () | 1585892..1586038 | + | 147 | WP_072433242.1 | hypothetical protein | - |
| CGP99_RS08120 () | 1586035..1586649 | - | 615 | WP_000191463.1 | hypothetical protein | - |
| CGP99_RS08125 () | 1586775..1587980 | + | 1206 | WP_000264751.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| CGP99_RS08130 () | 1588023..1590050 | - | 2028 | WP_115276639.1 | hypothetical protein | - |
| CGP99_RS08135 () | 1590043..1590972 | - | 930 | WP_001548912.1 | DUF1672 domain-containing protein | - |
| CGP99_RS08140 () | 1591217..1592968 | - | 1752 | WP_000987769.1 | two-component system sensor histidine kinase SrrB | - |
| CGP99_RS08145 () | 1592949..1593674 | - | 726 | WP_115276640.1 | Transcriptional regulatory protein SrrA | VF |
| CGP99_RS08150 () | 1593807..1594544 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| CGP99_RS08155 () | 1594537..1595079 | - | 543 | WP_000368653.1 | SMC-Scp complex subunit ScpB | - |
| CGP99_RS08160 () | 1595072..1595803 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| CGP99_RS08165 () | 1595895..1596401 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| CGP99_RS08170 () | 1596479..1597366 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CGP99_RS08175 () | 1597415..1597864 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| CGP99_RS08180 () | 1597969..1598511 | - | 543 | WP_000365246.1 | NUDIX hydrolase | - |
| CGP99_RS08185 () | 1598593..1599501 | + | 909 | WP_001171351.1 | aldo/keto reductase | - |
| CGP99_RS08190 () | 1599717..1599965 | - | 249 | WP_000995800.1 | hypothetical protein | - |
| CGP99_RS08195 () | 1599981..1600736 | - | 756 | WP_000678232.1 | SDR family oxidoreductase | - |
| CGP99_RS08200 () | 1600878..1601693 | + | 816 | WP_115276641.1 | pyrroline-5-carboxylate reductase | - |
| CGP99_RS08205 () | 1601798..1602718 | - | 921 | WP_000454064.1 | ribonuclease Z | - |
| CGP99_RS08210 () | 1603031..1604515 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| CGP99_RS08215 () | 1604745..1605611 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|