MGE detailed information
MGE type: Prophage MGE length: 49154 bp
Accession: NZ_CP022689 Location: 4842250..4891403 Organism: Escherichia coli strain CDC#03-98 Replicon: chromosome
Accession: NZ_CP022689 Location: 4842250..4891403 Organism: Escherichia coli strain CDC#03-98 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RM34_RS30130 () | 4838239..4838286 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RM34_RS25920 () | 4838300..4839283 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| RM34_RS25925 () | 4839558..4839728 | + | 171 | WP_001625136.1 | hypothetical protein | - |
| RM34_RS25930 () | 4839761..4841134 | + | 1374 | WP_000123746.1 | ATP-dependent RNA helicase DbpA | - |
| RM34_RS25935 () | 4841263..4842198 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RM34_RS25940 () | 4842250..4843485 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RM34_RS25945 () | 4843487..4843702 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| RM34_RS25950 () | 4843802..4843990 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 4843806..4843984 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4843806..4843984 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4843806..4843984 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4843806..4843984 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RM34_RS25955 () | 4844028..4844177 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RM34_RS25960 () | 4844233..4845042 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| RM34_RS25965 () | 4845035..4847635 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| RM34_RS25970 () | 4847737..4848012 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| RM34_RS25975 () | 4848087..4848257 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| RM34_RS25980 () | 4848257..4848478 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| RM34_RS25990 () | 4848920..4849408 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| RM34_RS25995 () | 4849405..4849560 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| RM34_RS26000 () | 4849571..4849750 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| RM34_RS26010 () | 4849993..4850412 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| RM34_RS26015 () | 4850492..4850746 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| RM34_RS26020 () | 4850743..4851165 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| RM34_RS26025 () | 4851243..4852031 | + | 789 | WP_001304174.1 | hypothetical protein | - |
| RM34_RS26030 () | 4852038..4852784 | + | 747 | WP_000788980.1 | ATP-binding protein | - |
| RM34_RS26035 () | 4852807..4853568 | + | 762 | WP_000450712.1 | DUF1627 domain-containing protein | - |
| RM34_RS26040 () | 4853584..4854006 | + | 423 | WP_001141110.1 | DUF977 family protein | - |
| RM34_RS26045 () | 4854112..4854324 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| RM34_RS26050 () | 4854357..4854574 | + | 218 | Protein_4621 | DUF4014 family protein | - |
| RM34_RS26055 () | 4854576..4854839 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| RM34_RS26060 () | 4854850..4855011 | + | 162 | WP_000208018.1 | hypothetical protein | - |
| RM34_RS26065 () | 4855090..4855335 | + | 246 | WP_000365100.1 | hypothetical protein | - |
| RM34_RS26070 () | 4855767..4856918 | + | 1152 | WP_001100703.1 | DNA cytosine methyltransferase | - |
| RM34_RS26075 () | 4856886..4857875 | - | 990 | WP_000016656.1 | hypothetical protein | - |
| RM34_RS26080 () | 4857875..4859266 | - | 1392 | WP_000138556.1 | ATP-binding protein | - |
| RM34_RS26085 () | 4859766..4860365 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| RM34_RS26090 () | 4860365..4860655 | + | 291 | WP_000247761.1 | DUF1364 domain-containing protein | - |
| RM34_RS26095 () | 4860652..4861206 | + | 555 | WP_000640158.1 | DUF1133 family protein | - |
| RM34_RS26110 () | 4861768..4862199 | + | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| RM34_RS26115 () | 4862196..4862451 | + | 256 | Protein_4632 | DUF3927 family protein | - |
| RM34_RS26125 () | 4862774..4864627 | + | 1854 | WP_000143079.1 | SASA family carbohydrate esterase | - |
| RM34_RS26130 () | 4864777..4864992 | + | 216 | WP_000284522.1 | class II holin family protein | - |
| RM34_RS26135 () | 4864997..4865341 | + | 345 | WP_000731221.1 | YdfR family protein | - |
| RM34_RS26140 () | 4865392..4865925 | + | 534 | WP_000992086.1 | lysozyme | - |
| RM34_RS26145 () | 4866199..4866894 | + | 696 | WP_000661712.1 | phage antirepressor protein | - |
| RM34_RS29740 () | 4866989..4867120 | + | 132 | WP_001280923.1 | hypothetical protein | - |
| RM34_RS29750 () | 4867343..4867528 | + | 186 | WP_012817877.1 | Rz1 family lipoprotein | - |
| RM34_RS26165 () | 4867929..4868255 | + | 327 | WP_000828070.1 | TonB family protein | - |
| RM34_RS26170 () | 4868387..4868587 | - | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| RM34_RS26175 () | 4868629..4868994 | + | 366 | WP_000829192.1 | HNH endonuclease | - |
| RM34_RS26185 () | 4869283..4869847 | + | 565 | Protein_4643 | terminase small subunit | - |
| RM34_RS26190 () | 4869844..4871505 | + | 1662 | WP_001411753.1 | terminase large subunit | - |
| RM34_RS26195 () | 4871569..4873506 | + | 1938 | WP_000173011.1 | phage major capsid protein | - |
| RM34_RS26200 () | 4873551..4873772 | + | 222 | WP_001063025.1 | hypothetical protein | - |
| RM34_RS26205 () | 4873718..4876302 | + | 2585 | Protein_4647 | phage portal protein | - |
| RM34_RS26210 () | 4876299..4876625 | + | 327 | WP_000125984.1 | head-tail connector protein | - |
| RM34_RS26215 () | 4876635..4876985 | + | 351 | WP_001007911.1 | phage head closure protein | - |
| RM34_RS26220 () | 4876982..4877428 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| RM34_RS26225 () | 4877425..4877769 | + | 345 | WP_000133393.1 | DUF3168 domain-containing protein | - |
| RM34_RS26230 () | 4877838..4878554 | + | 717 | WP_001275479.1 | immunoglobulin domain-containing protein | - |
| RM34_RS26235 () | 4878560..4878934 | + | 375 | WP_001030060.1 | phage tail assembly chaperone | - |
| RM34_RS26240 () | 4879030..4879239 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| RM34_RS26245 () | 4879291..4882371 | + | 3081 | WP_000212768.1 | phage tail tape measure protein | - |
| RM34_RS26250 () | 4882364..4882705 | + | 342 | WP_000807964.1 | phage tail protein | - |
| RM34_RS26255 () | 4882705..4883403 | + | 699 | WP_001152159.1 | phage minor tail protein L | - |
| RM34_RS26260 () | 4883414..4884157 | + | 744 | WP_000194763.1 | C40 family peptidase | - |
| RM34_RS26265 () | 4884103..4884735 | + | 633 | WP_064732755.1 | tail assembly protein | - |
| RM34_RS26275 () | 4884926..4885453 | - | 528 | WP_000649829.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| RM34_RS26280 () | 4885587..4889084 | + | 3498 | WP_000515042.1 | host specificity protein J | - |
| RM34_RS26285 () | 4889155..4889754 | + | 600 | WP_001230550.1 | Outer membrane protein X | VF |
| RM34_RS26290 () | 4889819..4891132 | + | 1314 | WP_000268955.1 | ISNCY family transposase KIS | Transposase |
| RM34_RS26295 () | 4891134..4891403 | + | 270 | WP_001023992.1 | phage tail fiber C-terminal domain-containing protein | - |
| RM34_RS26300 () | 4891516..4892091 | + | 576 | WP_001131659.1 | DUF1076 domain-containing protein | - |
| RM34_RS26305 () | 4892164..4892793 | + | 630 | WP_001443810.1 | DUF1076 domain-containing protein | - |
| RM34_RS26310 () | 4892875..4893516 | + | 642 | WP_001143784.1 | DUF1076 domain-containing protein | - |
| RM34_RS26315 () | 4894097..4894531 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
| RM34_RS26320 () | 4894672..4895785 | - | 1114 | Protein_4669 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA10219 | NC_002695 | 1921609..1970151 | 0.004 |