MGE detailed information
MGE type: Conjugative plasmid MGE length: 134899 bp
Accession: NZ_CP021871 Location: 1..134899 Organism: Escherichia coli strain H105 Replicon: plasmid pH105
Accession: NZ_CP021871 Location: 1..134899 Organism: Escherichia coli strain H105 Replicon: plasmid pH105
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCL28_RS25680 () | 925..1870 | - | 946 | Protein_1 | IS66 family transposase ISEc8 | Transposase |
| CCL28_RS25685 () | 1919..2266 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| CCL28_RS25690 () | 2263..2667 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| CCL28_RS25695 () | 2696..3079 | - | 384 | Protein_4 | IS3 family transposase IS629 | Transposase |
| CCL28_RS25700 () | 3169..4677 | - | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| CCL28_RS25715 () | 5350..6089 | - | 740 | Protein_6 | IS3 family transposase IS629 | Transposase |
| CCL28_RS26990 () | 6115..6420 | + | 306 | Protein_7 | IS91 family transposase ISSbo1 | Transposase |
| CCL28_RS25725 () | 6943..8118 | - | 1176 | WP_001020413.1 | putative protein YncE | VF |
| CCL28_RS25730 () | 8187..10448 | - | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| CCL28_RS25735 () | 10617..11393 | - | 777 | WP_000981091.1 | energy transducer TonB | - |
| CCL28_RS25740 () | 11401..12276 | - | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| CCL28_RS26995 () | 12608..13155 | - | 548 | Protein_12 | replication initiation protein | - |
| CCL28_RS25770 () | 14727..15062 | - | 336 | WP_001080732.1 | colicin transporter | - |
| CCL28_RS25780 () | 15191..15538 | + | 348 | WP_000142452.1 | hypothetical protein | - |
| CCL28_RS25785 () | 15558..16067 | - | 510 | WP_000194542.1 | hypothetical protein | - |
| CCL28_RS25790 () | 16064..16324 | - | 261 | WP_000371882.1 | hypothetical protein | - |
| CCL28_RS25795 () | 16426..17165 | + | 740 | Protein_17 | IS3 family transposase IS629 | Transposase |
| CCL28_RS27175 () | 17838..18152 | + | 315 | Protein_18 | IS5 family transposase ISKpn26 | Transposase |
| CCL28_RS27180 () | 18153..18326 | + | 174 | Protein_19 | IS5 family transposase ISKpn26 | Transposase |
| CCL28_RS25825 () | 18476..19109 | - | 634 | Protein_20 | histidine-type phosphatase | - |
| CCL28_RS25830 () | 19231..19716 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| CCL28_RS25835 () | 19741..20226 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| CCL28_RS25840 () | 20213..20908 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| CCL28_RS25845 () | 20913..22043 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| CCL28_RS25850 () | 22033..23316 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| CCL28_RS25855 () | 23319..24698 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| CCL28_RS25860 () | 24802..25329 | - | 528 | WP_000178050.1 | iron transporter | - |
| CCL28_RS25865 () | 25370..27256 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| CCL28_RS25875 () | 27603..28418 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| CCL28_RS25880 () | 28601..29107 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| CCL28_RS25885 () | 29097..29255 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| CCL28_RS27340 () | 29405..29518 | - | 114 | Protein_32 | IS6 family transposase | - |
| CCL28_RS25900 () | 29718..30415 | + | 698 | Protein_33 | IS1 family transposase IS1R | Transposase |
| CCL28_RS25905 () | 30430..30648 | + | 219 | Protein_34 | IS4 family transposase | - |
| CCL28_RS25915 () | 30698..31402 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CCL28_RS25925 () | 31461..32210 | - | 750 | Protein_36 | IS91 family transposase ISAzo26 | Transposase |
| CCL28_RS25930 () | 32368..32841 | + | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| CCL28_RS25935 () | 32972..33760 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CCL28_RS25940 () | 33966..34313 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CCL28_RS25945 () | 34307..35146 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CCL28_RS25955 () | 35274..35477 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CCL28_RS25960 () | 35633..36838 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CCL28_RS25965 () | 36849..37154 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| CCL28_RS27185 () | 37198..37263 | + | 66 | Protein_44 | EAL domain-containing protein | - |
| CCL28_RS25975 () | 37381..38145 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| CCL28_RS25985 () | 38638..39222 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CCL28_RS25990 () | 39222..40460 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| CCL28_RS25995 () | 40457..41362 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CCL28_RS26005 () | 41484..42188 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CCL28_RS26010 () | 42249..42425 | + | 177 | Protein_50 | replication protein C | - |
| CCL28_RS26020 () | 42733..43548 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| CCL28_RS26025 () | 43609..44412 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| CCL28_RS26030 () | 44412..45248 | + | 837 | WP_000480972.1 | hypothetical protein | ARG |
| CCL28_RS26035 () | 45302..45538 | + | 237 | WP_042005022.1 | hypothetical protein | - |
| CCL28_RS26040 () | 45570..46196 | - | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CCL28_RS26045 () | 46302..47501 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| CCL28_RS26050 () | 47533..47865 | - | 333 | Protein_57 | EamA family transporter | - |
| CCL28_RS26055 () | 47918..48622 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CCL28_RS26065 () | 48682..49044 | - | 363 | Protein_59 | IS5 family transposase IS903B | Transposase |
| CCL28_RS26070 () | 49079..49954 | - | 876 | WP_032277257.1 | Beta-lactamase CTX-M-97 | ARG |
| CCL28_RS26075 () | 50268..50972 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CCL28_RS26085 () | 51038..51583 | + | 546 | Protein_62 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CCL28_RS26090 () | 51619..52034 | - | 416 | Protein_63 | IS1 family transposase | - |
| CCL28_RS26100 () | 52283..52684 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CCL28_RS27005 () | 52617..52874 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CCL28_RS26105 () | 52967..53620 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CCL28_RS26115 () | 54560..55417 | - | 858 | WP_001617855.1 | incFII family plasmid replication initiator RepA | - |
| CCL28_RS26120 () | 55410..55484 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| CCL28_RS27190 () | 55481..55615 | - | 135 | Protein_69 | protein CopA/IncA | - |
| CCL28_RS26130 () | 55721..55975 | - | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| CCL28_RS26135 () | 56272..56406 | - | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 56451..56511 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 56451..56511 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 56451..56511 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 56451..56511 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| CCL28_RS27195 () | 56478..56764 | - | 287 | Protein_72 | DUF2726 domain-containing protein | - |
| CCL28_RS26145 () | 56842..58455 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| CCL28_RS26150 () | 58486..58836 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| CCL28_RS26155 () | 58833..59258 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| CCL28_RS26165 () | 59817..60029 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| CCL28_RS26170 () | 60160..60720 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| CCL28_RS26175 () | 60775..61521 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CCL28_RS26180 () | 61541..66811 | - | 5271 | WP_001617867.1 | Multifunctional conjugation protein TraI | Relaxase |
| CCL28_RS26185 () | 66811..69054 | - | 2244 | WP_077393706.1 | type IV conjugative transfer system coupling protein TraD | - |
| CCL28_RS26190 () | 69051..69830 | - | 780 | WP_000199914.1 | hypothetical protein | - |
| CCL28_RS26195 () | 70033..70764 | - | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| CCL28_RS26200 () | 70796..71293 | - | 498 | WP_000605862.1 | entry exclusion protein | - |
| CCL28_RS26205 () | 71312..74131 | - | 2820 | WP_001007062.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CCL28_RS26210 () | 74128..75501 | - | 1374 | WP_000944328.1 | conjugal transfer protein TraH | - |
| CCL28_RS26215 () | 75488..75913 | - | 426 | WP_001348758.1 | F-type conjugal transfer protein TrbF | - |
| CCL28_RS26220 () | 75861..76208 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| CCL28_RS26225 () | 76138..76683 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CCL28_RS26230 () | 76670..76954 | - | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CCL28_RS26235 () | 77081..77401 | - | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| CCL28_RS26240 () | 77449..78146 | - | 698 | Protein_91 | IS1 family transposase IS1G | Transposase |
| CCL28_RS26245 () | 78220..78531 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CCL28_RS26250 () | 78536..78898 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CCL28_RS26255 () | 78932..79159 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CCL28_RS26260 () | 79247..79924 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| CCL28_RS26265 () | 80058..80441 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| CCL28_RS26270 () | 80772..81374 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| CCL28_RS26275 () | 81671..82492 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CCL28_RS26280 () | 82611..82898 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CCL28_RS27200 () | 82923..83129 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| CCL28_RS27205 () | 83042..83377 | - | 336 | WP_013023876.1 | hypothetical protein | - |
| CCL28_RS26295 () | 83820..83978 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 84022..84062 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84022..84062 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84022..84062 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84022..84062 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 85506..85692 | - | 187 | NuclAT_0 | - | - |
| - () | 85506..85692 | - | 187 | NuclAT_0 | - | - |
| - () | 85506..85692 | - | 187 | NuclAT_0 | - | - |
| - () | 85506..85692 | - | 187 | NuclAT_0 | - | - |
| CCL28_RS26310 () | 85704..86423 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CCL28_RS26315 () | 86420..86854 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CCL28_RS26320 () | 86909..88867 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CCL28_RS26325 () | 88933..89166 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| CCL28_RS26330 () | 89229..89768 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| CCL28_RS27210 () | 89913..90248 | - | 336 | WP_013023883.1 | hypothetical protein | - |
| CCL28_RS26345 () | 90411..90659 | - | 249 | WP_001553845.1 | hypothetical protein | - |
| CCL28_RS26350 () | 90685..91248 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CCL28_RS26355 () | 91296..92657 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CCL28_RS26360 () | 92709..92939 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CCL28_RS26375 () | 93974..94165 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CCL28_RS26380 () | 94162..94584 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CCL28_RS26385 () | 94631..94933 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CCL28_RS27010 () | 95473..96249 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| CCL28_RS26400 () | 96300..96734 | - | 435 | WP_063607165.1 | DUF1380 family protein | - |
| CCL28_RS26405 () | 96748..96969 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CCL28_RS26410 () | 96970..97653 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CCL28_RS26415 () | 97730..98034 | - | 305 | Protein_121 | hypothetical protein | - |
| CCL28_RS26420 () | 98038..98940 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CCL28_RS26435 () | 99807..100778 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CCL28_RS26440 () | 100778..101944 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CCL28_RS26445 () | 102532..103287 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CCL28_RS26450 () | 104061..104867 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| CCL28_RS26455 () | 104868..105173 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CCL28_RS26460 () | 105175..105393 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CCL28_RS26465 () | 106101..107096 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| CCL28_RS26470 () | 107100..108032 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| CCL28_RS26475 () | 108169..108866 | - | 698 | Protein_131 | IS1 family transposase IS1G | Transposase |
| CCL28_RS26485 () | 109080..112196 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| CCL28_RS26490 () | 112318..113589 | - | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| CCL28_RS26495 () | 113586..115142 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| CCL28_RS26500 () | 115325..115546 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CCL28_RS26505 () | 115546..115926 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CCL28_RS26510 () | 115931..116110 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| CCL28_RS26515 () | 116138..116497 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| CCL28_RS26520 () | 116421..116834 | + | 414 | Protein_139 | IS3 family transposase ISLad1 | Transposase |
| CCL28_RS26525 () | 116784..117101 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| CCL28_RS26530 () | 117329..118309 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| CCL28_RS26535 () | 118553..119956 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| CCL28_RS26540 () | 119943..120875 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| CCL28_RS26545 () | 120984..121313 | - | 330 | Protein_144 | TOBE domain-containing protein | - |
| CCL28_RS26550 () | 121329..122026 | - | 698 | Protein_145 | IS1 family transposase IS1R | Transposase |
| CCL28_RS26560 () | 122084..122332 | + | 249 | Protein_146 | abortive infection family protein | - |
| CCL28_RS26565 () | 122701..123432 | - | 732 | WP_001617898.1 | hypothetical protein | - |
| CCL28_RS26575 () | 124218..125195 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CCL28_RS26580 () | 125480..126220 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| CCL28_RS26585 () | 126341..126529 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| CCL28_RS26590 () | 126896..128065 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| CCL28_RS27015 () | 128291..128466 | - | 176 | Protein_152 | IS3 family transposase | - |
| CCL28_RS26595 () | 128912..129184 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| CCL28_RS26600 () | 129709..130145 | - | 437 | Protein_154 | IS3 family transposase IS2 | Transposase |
| CCL28_RS26610 () | 130427..132397 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| CCL28_RS26615 () | 132404..133195 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| CCL28_RS26620 () | 133258..133866 | - | 609 | Protein_157 | IS66 family transposase ISEc22 | Transposase |
| CCL28_RS26625 () | 133934..134716 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|