MGE detailed information
MGE type: Conjugative plasmid MGE length: 84091 bp
Accession: NZ_CP021847 Location: 1..84091 Organism: Escherichia coli strain EC1515 Replicon: plasmid pEC1515-3
Accession: NZ_CP021847 Location: 1..84091 Organism: Escherichia coli strain EC1515 Replicon: plasmid pEC1515-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH89_RS27490 () | 507..715 | + | 209 | Protein_1 | hemolysin expression modulator Hha | - |
| CDH89_RS27495 () | 754..1344 | + | 591 | WP_000766814.1 | DUF2726 domain-containing protein | - |
| CDH89_RS27500 () | 1584..1838 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| CDH89_RS27510 () | 2076..2150 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CDH89_RS27515 () | 2143..3000 | + | 858 | WP_072652179.1 | incFII family plasmid replication initiator RepA | - |
| CDH89_RS27525 () | 3939..4592 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CDH89_RS28430 () | 4685..4942 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CDH89_RS27530 () | 4875..5276 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CDH89_RS27535 () | 5561..7333 | + | 1773 | WP_001262767.1 | DUF262 domain-containing protein | - |
| CDH89_RS27540 () | 7823..8683 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CDH89_RS27545 () | 8884..9581 | - | 698 | Protein_11 | IS1 family transposase | - |
| CDH89_RS27555 () | 9660..10357 | - | 698 | Protein_12 | IS1 family transposase IS1R | Transposase |
| CDH89_RS27560 () | 10419..10976 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CDH89_RS28435 () | 11140..11280 | + | 141 | WP_020219413.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CDH89_RS27575 () | 11398..12102 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH89_RS27580 () | 12155..12952 | - | 798 | Protein_16 | IS91 family transposase ISAzo26 | Transposase |
| CDH89_RS27585 () | 13101..13892 | + | 792 | WP_032491824.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH89_RS27590 () | 14024..14845 | + | 822 | WP_000939727.1 | hypothetical protein | ARG |
| CDH89_RS27595 () | 14998..15702 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH89_RS27600 () | 15775..16014 | + | 240 | WP_011264039.1 | macrolide transporter | - |
| CDH89_RS27605 () | 16160..17023 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| CDH89_RS27610 () | 17061..17306 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| CDH89_RS27620 () | 17775..18566 | + | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| CDH89_RS28635 () | 18569..18844 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| CDH89_RS27625 () | 18846..19481 | + | 636 | Protein_25 | IS256 family transposase IS406 | Transposase |
| CDH89_RS27635 () | 19746..20078 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| CDH89_RS27640 () | 20248..21039 | - | 792 | WP_001206316.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH89_RS27645 () | 21128..21970 | - | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| CDH89_RS27655 () | 22435..22941 | - | 507 | Protein_29 | IS91-like element ISVsa3 family transposase | - |
| CDH89_RS27660 () | 23006..23710 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH89_RS27665 () | 23763..26621 | + | 2859 | Protein_31 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CDH89_RS27675 () | 26937..27242 | + | 306 | WP_001152000.1 | hypothetical protein | - |
| CDH89_RS27680 () | 27253..27487 | + | 235 | Protein_33 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CDH89_RS27685 () | 27615..27896 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| CDH89_RS27690 () | 28019..28369 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| CDH89_RS27695 () | 28372..29334 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| CDH89_RS27700 () | 29482..29775 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| CDH89_RS27710 () | 29852..30535 | + | 684 | WP_000085884.1 | DNA methylase | - |
| CDH89_RS27715 () | 30536..30757 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| CDH89_RS27720 () | 30771..31205 | + | 435 | WP_000274465.1 | DUF1380 family protein | - |
| CDH89_RS28640 () | 31250..32020 | + | 771 | WP_044257554.1 | hypothetical protein | - |
| CDH89_RS27735 () | 32559..32861 | + | 303 | WP_077636047.1 | antirestriction protein | - |
| CDH89_RS27740 () | 32908..33327 | + | 420 | WP_044257555.1 | DUF1380 family protein | - |
| CDH89_RS27745 () | 33327..33518 | + | 192 | WP_001493747.1 | hypothetical protein | - |
| CDH89_RS27760 () | 34552..34782 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CDH89_RS27765 () | 34834..36195 | + | 1362 | WP_000170713.1 | DUF3560 domain-containing protein | - |
| CDH89_RS27770 () | 36242..36805 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| CDH89_RS27780 () | 36957..37211 | + | 255 | WP_071598075.1 | hypothetical protein | - |
| CDH89_RS27800 () | 37684..38211 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| CDH89_RS27805 () | 38267..38500 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CDH89_RS27810 () | 38559..40523 | + | 1965 | WP_079976098.1 | ParB/RepB/Spo0J family partition protein | - |
| CDH89_RS27815 () | 40592..41026 | + | 435 | WP_000845894.1 | conjugation system SOS inhibitor PsiB | - |
| CDH89_RS27820 () | 41023..41742 | + | 720 | WP_000116352.1 | plasmid SOS inhibition protein A | - |
| CDH89_RS28440 () | 41754..41942 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 41754..41978 | + | 225 | NuclAT_0 | - | - |
| - () | 41754..41978 | + | 225 | NuclAT_0 | - | - |
| - () | 41754..41978 | + | 225 | NuclAT_0 | - | - |
| - () | 41754..41978 | + | 225 | NuclAT_0 | - | - |
| CDH89_RS27825 () | 42022..42180 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CDH89_RS28445 () | 42475..42786 | + | 312 | WP_198320231.1 | hypothetical protein | - |
| CDH89_RS27840 () | 43259..43786 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| CDH89_RS27845 () | 43842..44075 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CDH89_RS27850 () | 44134..46098 | + | 1965 | WP_079976098.1 | ParB/RepB/Spo0J family partition protein | - |
| CDH89_RS27855 () | 46167..46601 | + | 435 | WP_000845894.1 | conjugation system SOS inhibitor PsiB | - |
| CDH89_RS27860 () | 46598..47317 | + | 720 | WP_000116352.1 | plasmid SOS inhibition protein A | - |
| CDH89_RS28450 () | 47329..47517 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 47329..47553 | + | 225 | NuclAT_1 | - | - |
| - () | 47329..47553 | + | 225 | NuclAT_1 | - | - |
| - () | 47329..47553 | + | 225 | NuclAT_1 | - | - |
| - () | 47329..47553 | + | 225 | NuclAT_1 | - | - |
| - () | 47486..47551 | + | 66 | - | - | Antitoxin Detail |
| CDH89_RS27865 () | 47597..47755 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CDH89_RS28645 () | 48446..48652 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| CDH89_RS27880 () | 48677..48964 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CDH89_RS27885 () | 49083..49904 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CDH89_RS27890 () | 50201..50848 | - | 648 | WP_157698281.1 | hypothetical protein | VF |
| CDH89_RS27895 () | 51125..51508 | + | 384 | WP_000124979.1 | relaxosome protein TraM | - |
| CDH89_RS27900 () | 51699..52385 | + | 687 | WP_000332493.1 | PAS domain-containing protein | - |
| CDH89_RS27905 () | 52479..52706 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CDH89_RS27910 () | 52740..53102 | + | 363 | WP_000340279.1 | type IV conjugative transfer system pilin TraA | - |
| CDH89_RS27915 () | 53107..53418 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CDH89_RS27920 () | 53440..54006 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CDH89_RS27925 () | 54017..54721 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CDH89_RS27930 () | 54721..56148 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| CDH89_RS27935 () | 56138..56710 | + | 573 | WP_000002780.1 | conjugal transfer protein TraP | - |
| CDH89_RS27940 () | 56707..57024 | + | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| CDH89_RS27945 () | 57021..57272 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| CDH89_RS27950 () | 57269..57784 | + | 516 | WP_039021963.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CDH89_RS27955 () | 57919..58140 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| CDH89_RS27960 () | 58300..60927 | + | 2628 | WP_039021964.1 | type IV secretion system protein TraC | - |
| CDH89_RS27965 () | 60924..61310 | + | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| CDH89_RS27970 () | 61307..61939 | + | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| CDH89_RS27975 () | 61936..62928 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| CDH89_RS27980 () | 62954..63415 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| CDH89_RS27985 () | 63445..63897 | + | 453 | WP_039021965.1 | hypothetical protein | - |
| CDH89_RS27990 () | 63925..64563 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CDH89_RS27995 () | 64560..66368 | + | 1809 | WP_000821818.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CDH89_RS28000 () | 66395..66652 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| CDH89_RS28005 () | 66645..67388 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CDH89_RS28010 () | 67404..67751 | + | 348 | WP_001287902.1 | conjugal transfer protein TrbA | - |
| CDH89_RS28015 () | 67870..68154 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CDH89_RS28020 () | 68141..68686 | + | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CDH89_RS28025 () | 68616..68978 | + | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| CDH89_RS28030 () | 68978..70350 | + | 1373 | Protein_95 | conjugal transfer protein TraH | - |
| CDH89_RS28035 () | 70347..73172 | + | 2826 | WP_001493899.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CDH89_RS28040 () | 73169..73678 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| CDH89_RS28045 () | 73692..74423 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| CDH89_RS28050 () | 74675..76855 | + | 2181 | WP_001493790.1 | type IV conjugative transfer system coupling protein TraD | - |
| CDH89_RS28055 () | 76855..82125 | + | 5271 | WP_088172509.1 | Multifunctional conjugation protein TraI | Relaxase |
| CDH89_RS28060 () | 82145..82891 | + | 747 | WP_001825166.1 | conjugal transfer pilus acetylase TraX | - |
| CDH89_RS28065 () | 82946..83506 | + | 561 | WP_000139345.1 | fertility inhibition protein FinO | - |
| CDH89_RS28070 () | 83637..83849 | + | 213 | WP_001311693.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|