MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 187417 bp
Accession: NZ_CP021659        Location: 2490566..2677982         Organism: Candidatus Fukatsuia symbiotica strain 5D       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CCS41_RS12065 () 2486434..2487138 + 705 WP_072550430.1 integrase arm-type DNA-binding domain-containing protein -
CCS41_RS12070 () 2487188..2488210 + 1023 WP_119797384.1 IS630 family transposase -
CCS41_RS12075 () 2488217..2488774 + 558 WP_119797598.1 tyrosine-type recombinase/integrase -
CCS41_RS15720 () 2488944..2489114 + 171 WP_162860071.1 hypothetical protein -
CCS41_RS12080 () 2489098..2489544 + 447 WP_119797599.1 hypothetical protein -
CCS41_RS12085 () 2489655..2489873 + 219 WP_119797600.1 AlpA family phage regulatory protein -
CCS41_RS12090 () 2490023..2490388 + 366 WP_119797399.1 IS630 transposase-related protein -
CCS41_RS12095 () 2490552..2490779 + 228 WP_119797601.1 transposase -
CCS41_RS12100 () 2490780..2491868 + 1089 WP_119797602.1 IS4 family transposase ISLpn5 Transposase
CCS41_RS12105 () 2491868..2492182 + 315 WP_119797603.1 hypothetical protein -
CCS41_RS15725 () 2492190..2492378 + 189 Protein_2336 hypothetical protein -
CCS41_RS12120 () 2493170..2493376 + 207 WP_119797606.1 DUF2724 domain-containing protein -
CCS41_RS12125 () 2493390..2493736 + 347 Protein_2338 DUF5347 family protein -
CCS41_RS12130 () 2493812..2494153 + 342 WP_119797607.1 hypothetical protein -
CCS41_RS12135 () 2494360..2496441 + 2082 Protein_2340 replication endonuclease -
CCS41_RS12140 () 2496749..2497666 + 918 WP_119797608.1 hypothetical protein -
CCS41_RS12145 () 2497639..2497887 + 249 WP_119797609.1 hypothetical protein -
CCS41_RS12150 () 2497905..2498459 + 555 WP_162860072.1 IS630 family transposase ISSpu23 Transposase
CCS41_RS15730 () 2498485..2498628 + 144 WP_162860073.1 IS630 family transposase ISEc40 Transposase
CCS41_RS12155 () 2498771..2500147 - 1377 WP_072550701.1 envelope stress sensor histidine kinase CpxA -
CCS41_RS12160 () 2500144..2500842 - 699 WP_072550702.1 Transcriptional regulatory protein CpxR VF
CCS41_RS12165 () 2500985..2501419 + 435 WP_083429634.1 Spy/CpxP family protein refolding chaperone -
CCS41_RS12170 () 2501714..2502694 + 981 WP_072550729.1 6-phosphofructokinase -
CCS41_RS12175 () 2503090..2504217 + 1128 WP_119797611.1 hypothetical protein -
CCS41_RS12180 () 2504344..2505111 - 768 WP_072550705.1 triose-phosphate isomerase -
CCS41_RS12185 () 2506122..2506469 + 348 WP_072550706.1 Grx4 family monothiol glutaredoxin -
CCS41_RS12190 () 2506629..2507303 - 675 WP_119797771.1 ribonuclease T -
CCS41_RS12195 () 2508231..2510440 + 2210 Protein_2353 Invasin VF
CCS41_RS12200 () 2510568..2511485 + 918 WP_205411426.1 ornithine carbamoyltransferase -
CCS41_RS12205 () 2511593..2512477 + 885 WP_072550709.1 hypothetical protein VF
CCS41_RS12210 () 2512874..2514031 + 1158 WP_205411427.1 hypothetical protein -
CCS41_RS12215 () 2514063..2514512 + 450 WP_072550711.1 transcriptional regulator NrdR -
CCS41_RS12220 () 2514607..2515350 + 744 WP_072550712.1 type 2 GTP cyclohydrolase I -
CCS41_RS12225 () 2515415..2516455 - 1041 WP_072550713.1 PLP-dependent cysteine synthase family protein -
CCS41_RS12230 () 2516579..2517040 + 462 WP_072550714.1 Lrp/AsnC family transcriptional regulator -
CCS41_RS12235 () 2517493..2518215 + 723 WP_119797612.1 30S ribosomal protein S2 -
CCS41_RS12240 () 2518345..2519193 + 849 WP_072550715.1 elongation factor Ts -
CCS41_RS12245 () 2519316..2520044 + 729 WP_072550716.1 UMP kinase -
CCS41_RS12250 () 2520195..2520752 + 558 WP_072550717.1 ribosome recycling factor -
CCS41_RS12255 () 2520788..2522035 + 1248 WP_072550718.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
CCS41_RS12260 () 2522013..2522771 + 759 WP_072550719.1 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) VF
CCS41_RS12265 () 2522869..2523717 + 849 WP_072550720.1 Phosphatidate cytidylyltransferase VF
CCS41_RS12270 () 2523760..2525115 + 1356 WP_072550721.1 Regulator of sigma-E protease RseP VF
CCS41_RS12275 () 2525150..2527537 + 2388 WP_072550722.1 outer membrane protein assembly factor BamA -
CCS41_RS12280 () 2527641..2528138 + 498 WP_072550723.1 molecular chaperone Skp -
CCS41_RS12285 () 2528142..2529209 + 1068 WP_072550724.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase VF
CCS41_RS12290 () 2529343..2529819 + 477 WP_162860075.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ VF
CCS41_RS12295 () 2529816..2530604 + 789 WP_072550726.1 Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase VF
CCS41_RS12300 () 2530608..2531807 + 1200 WP_072550727.1 Lipid-A-disaccharide synthase VF
CCS41_RS16155 () 2531831..2532451 - 621 WP_205411515.1 serine hydrolase -
CCS41_RS16160 () 2532530..2532826 - 297 WP_205411516.1 serine hydrolase -
CCS41_RS12310 () 2532813..2533835 - 1023 WP_119797613.1 IS630 family transposase ISVa15 Transposase
CCS41_RS15735 () 2533881..2534057 + 177 WP_162860076.1 hypothetical protein -
CCS41_RS12320 () 2534429..2537059 + 2631 WP_072550506.1 alanine--tRNA ligase -
CCS41_RS12325 () 2537311..2537496 + 186 WP_072550507.1 carbon storage regulator CsrA -
CCS41_RS12330 () 2537890..2539161 - 1272 WP_072550508.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
CCS41_RS12335 () 2539363..2539617 - 255 WP_072550541.1 BolA family transcriptional regulator -
CCS41_RS12340 () 2539789..2540082 - 294 WP_072550509.1 lipid asymmetry maintenance protein MlaB -
CCS41_RS12345 () 2540085..2540711 - 627 WP_072550510.1 phospholipid-binding protein MlaC -
CCS41_RS12350 () 2540807..2541307 - 501 WP_072550511.1 outer membrane lipid asymmetry maintenance protein MlaD -
CCS41_RS12355 () 2541311..2542093 - 783 WP_072550512.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
CCS41_RS12360 () 2542281..2543111 - 831 WP_072550513.1 putative phospholipid import ATP-binding protein MlaF VF
CCS41_RS12365 () 2543190..2544332 - 1143 WP_072550514.1 recombinase RecA -
CCS41_RS16165 () 2544423..2544560 + 138 WP_205411428.1 hypothetical protein -
CCS41_RS12375 () 2544596..2545084 - 489 WP_072550515.1 nicotinamide-nucleotide amidase -
CCS41_RS12380 () 2545347..2546309 + 963 WP_072550516.1 Putative conjugal transfer protein VF
CCS41_RS12385 () 2546321..2546722 + 402 WP_072550517.1 TrbC/VirB2 family protein -
CCS41_RS12390 () 2546725..2547036 + 312 WP_072550518.1 conjugal transfer protein TrbD -
CCS41_RS12395 () 2547057..2549609 + 2553 WP_119797772.1 VirB4 family type IV secretion/conjugal transfer ATPase -
CCS41_RS12400 () 2549614..2550315 + 702 WP_072550519.1 conjugal transfer protein TrbF -
CCS41_RS12405 () 2550350..2551237 + 888 WP_072550543.1 P-type conjugative transfer protein TrbG -
CCS41_RS12410 () 2551237..2551716 + 480 WP_205411429.1 conjugal transfer protein TrbH -
CCS41_RS12415 () 2551722..2553060 + 1339 Protein_2398 conjugal transfer protein TrbI -
CCS41_RS12420 () 2553078..2553869 + 792 WP_072550521.1 P-type conjugative transfer protein TrbJ -
CCS41_RS12425 () 2553884..2555221 + 1338 WP_072550522.1 P-type conjugative transfer protein TrbL -
CCS41_RS12430 () 2555389..2555970 - 582 WP_072550523.1 aminodeoxychorismate synthase component II -
CCS41_RS12435 () 2556077..2558101 - 2025 WP_072550524.1 TonB-dependent copper receptor -
CCS41_RS12440 () 2558408..2560096 + 1689 WP_072550525.1 hypothetical protein -
CCS41_RS12445 () 2560178..2560798 + 621 WP_072550544.1 thiol:disulfide interchange protein DsbA -
CCS41_RS12450 () 2560957..2561502 - 546 WP_072550526.1 hypothetical protein -
CCS41_RS12455 () 2562060..2564860 + 2801 Protein_2406 DNA polymerase I -
CCS41_RS12460 () 2564893..2565513 - 621 WP_072550528.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
CCS41_RS12470 () 2565827..2566546 + 720 WP_072550530.1 Transcriptional regulatory protein OmpR VF
CCS41_RS12475 () 2566543..2567874 + 1332 WP_119797616.1 Osmolarity sensor protein EnvZ VF
CCS41_RS12480 () 2567917..2568297 - 381 WP_072550532.1 VOC family protein -
CCS41_RS12485 () 2568628..2569683 - 1056 WP_072550533.1 hypothetical protein -
CCS41_RS15740 () 2570196..2570384 + 189 WP_083429615.1 IS982 family transposase ISNeu1 Transposase
CCS41_RS12490 () 2570845..2571123 + 279 WP_072550545.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
CCS41_RS12495 () 2571123..2571407 + 285 WP_072550534.1 HigA family addiction module antidote protein Antitoxin Detail
CCS41_RS12505 () 2571816..2572067 - 252 WP_072550536.1 pyocin activator PrtN family protein -
CCS41_RS12520 () 2573742..2574464 - 723 WP_072550538.1 helix-turn-helix transcriptional regulator -
CCS41_RS12525 () 2574699..2574968 - 270 WP_072550539.1 transcriptional regulator -
CCS41_RS12535 () 2576817..2577637 + 821 WP_119797617.1 IS5 family transposase ISCaa2 Transposase
CCS41_RS12540 () 2577683..2578114 - 432 WP_119797021.1 IS200-IS605 family transposase ISAzo20 Transposase
CCS41_RS12545 () 2578233..2579237 + 1005 Protein_2420 IS630 family transposase ISVa15 Transposase
CCS41_RS12550 () 2579300..2579485 + 186 WP_119797618.1 IS630 family transposase ISVa15 Transposase
CCS41_RS12555 () 2579598..2579969 - 372 WP_119797619.1 hypothetical protein -
CCS41_RS12560 () 2580064..2580288 + 225 WP_119797620.1 helix-turn-helix domain-containing protein -
CCS41_RS16170 () 2580482..2580631 + 150 WP_205411430.1 hypothetical protein -
CCS41_RS12565 () 2580762..2581559 + 798 WP_119797621.1 replication protein -
CCS41_RS12570 () 2581565..2582412 + 848 Protein_2426 ATP-binding protein -
CCS41_RS12575 () 2582697..2583083 + 387 WP_119797622.1 hypothetical protein -
CCS41_RS12580 () 2583237..2583638 + 402 WP_162860077.1 hypothetical protein -
CCS41_RS12585 () 2583868..2584311 + 444 WP_119797624.1 hypothetical protein -
CCS41_RS12590 () 2584394..2586331 + 1938 WP_119797625.1 phage tail protein -
CCS41_RS12595 () 2586487..2588149 + 1663 Protein_2431 phage tail sheath family protein -
CCS41_RS12600 () 2588229..2588687 + 459 WP_205411431.1 phage tail protein -
CCS41_RS12605 () 2588710..2589186 + 477 WP_119797627.1 phage tail protein -
CCS41_RS12610 () 2589189..2589464 + 276 WP_119797773.1 hypothetical protein -
CCS41_RS12615 () 2589468..2590163 + 696 WP_119797628.1 hypothetical protein -
CCS41_RS12620 () 2590164..2591833 + 1670 Protein_2436 type VI secretion system tip protein VgrG -
CCS41_RS12625 () 2591846..2592256 + 411 WP_119797629.1 GPW/gp25 family protein -
CCS41_RS12630 () 2592520..2592953 + 434 Protein_2438 hypothetical protein -
CCS41_RS12635 () 2593062..2597518 + 4457 Protein_2439 baseplate J/gp47 family protein -
CCS41_RS12640 () 2597552..2598790 + 1239 WP_119797630.1 tail fiber domain-containing protein -
CCS41_RS12645 () 2598849..2599067 + 219 WP_119797631.1 hypothetical protein -
CCS41_RS12650 () 2599118..2600917 + 1800 WP_119797632.1 hypothetical protein -
CCS41_RS12655 () 2600929..2601738 + 810 WP_119797633.1 hypothetical protein -
CCS41_RS12660 () 2601752..2604115 + 2364 WP_119797634.1 hypothetical protein -
CCS41_RS12665 () 2604118..2606271 + 2154 WP_119797635.1 AAA family ATPase -
CCS41_RS12670 () 2606256..2606854 + 599 Protein_2446 DUF4255 domain-containing protein -
CCS41_RS15745 () 2606927..2608690 + 1764 WP_119963685.1 DUF4157 domain-containing protein -
CCS41_RS12680 () 2608778..2608861 + 84 Protein_2448 IS5/IS1182 family transposase -
CCS41_RS12685 () 2608861..2609286 - 426 WP_119797636.1 type II toxin-antitoxin system VapC family toxin -
CCS41_RS12690 () 2609299..2609565 - 267 WP_119797637.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
CCS41_RS12695 () 2609687..2610511 + 825 WP_119797774.1 N-acetylmuramoyl-L-alanine amidase -
CCS41_RS12705 () 2610967..2611224 + 258 WP_119797638.1 hypothetical protein -
CCS41_RS12710 () 2611262..2611585 + 324 WP_119797639.1 type II toxin-antitoxin system RelE/ParE family toxin -
CCS41_RS12715 () 2611598..2611908 + 311 Protein_2454 addiction module antidote protein -
CCS41_RS12720 () 2612017..2612304 - 288 WP_119797640.1 hypothetical protein -
CCS41_RS12730 () 2613318..2613791 - 474 WP_205411517.1 IS630 family transposase ISOt3 Transposase
CCS41_RS12735 () 2613772..2614140 - 369 WP_119797643.1 IS630 family transposase ISTcSa Transposase
CCS41_RS12740 () 2614255..2614869 - 615 WP_119797644.1 Tn3 family transposase TnpR_ISMex22 Transposase
CCS41_RS12745 () 2614985..2616157 - 1173 WP_119797645.1 TniQ family protein -
CCS41_RS12750 () 2616154..2617063 - 910 Protein_2460 TniB family NTP-binding protein -
CCS41_RS12755 () 2617066..2618730 - 1665 WP_119797646.1 Transposon Tn7 transposition protein TnsB ; Integrase Integrase
CCS41_RS12760 () 2619370..2619825 + 456 WP_119797647.1 Hsp20 family protein -
CCS41_RS12765 () 2620164..2620772 + 609 WP_119797648.1 hypothetical protein -
CCS41_RS12770 () 2620757..2621860 + 1104 WP_162860078.1 Cytolethal distending toxin subunit B VF
CCS41_RS12775 () 2622173..2622484 + 312 WP_205411432.1 IS21 family transposase ISAeme17 Transposase
CCS41_RS12780 () 2622570..2622851 + 282 WP_119797650.1 IS481 family transposase ISFw3 Transposase
CCS41_RS12785 () 2623403..2623639 + 237 WP_119797651.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
CCS41_RS12790 () 2623626..2624036 + 411 WP_119797652.1 PIN domain-containing protein Toxin Detail
CCS41_RS12795 () 2624275..2629185 - 4911 WP_205411433.1 conjugative transfer relaxase/helicase TraI -
CCS41_RS16175 () 2629176..2629451 - 276 WP_205411434.1 relaxase domain-containing protein -
CCS41_RS12800 () 2629451..2631552 - 2102 Protein_2471 type IV conjugative transfer system coupling protein TraD -
CCS41_RS12805 () 2631626..2631823 - 198 WP_205411518.1 hypothetical protein -
CCS41_RS12810 () 2632167..2632292 - 126 WP_081498174.1 DUF4158 domain-containing protein -
CCS41_RS12815 () 2632345..2632632 - 288 WP_119797654.1 type II toxin-antitoxin system RelE/ParE family toxin -
CCS41_RS12820 () 2632632..2632853 - 222 WP_006707195.1 hypothetical protein -
CCS41_RS12825 () 2633316..2633519 - 204 WP_162860079.1 IS5 family transposase ISPsp10 Transposase
CCS41_RS12830 () 2633663..2634028 - 366 WP_119797656.1 transposase -
CCS41_RS12835 () 2634204..2635440 + 1237 Protein_2478 IS4 family transposase ISPpr4 Transposase
CCS41_RS12840 () 2635569..2636918 - 1350 WP_119797657.1 Fic family protein -
CCS41_RS12845 () 2637135..2640194 - 3060 WP_119797658.1 conjugal transfer mating pair stabilization protein TraG -
CCS41_RS12850 () 2640196..2641563 - 1368 WP_119797659.1 conjugal transfer protein TraH -
CCS41_RS12855 () 2641563..2642071 - 509 Protein_2482 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
CCS41_RS12860 () 2642085..2642657 - 573 Protein_2483 type-F conjugative transfer system pilin assembly protein TraF -
CCS41_RS12865 () 2642851..2643834 - 984 WP_119797660.1 conjugal transfer protein TraN -
CCS41_RS12870 () 2643902..2644639 - 738 WP_162860080.1 hypothetical protein -
CCS41_RS12875 () 2644678..2645286 - 609 WP_119797662.1 type-F conjugative transfer system pilin assembly protein TrbC -
CCS41_RS12880 () 2645295..2646295 - 1001 Protein_2487 conjugal transfer pilus assembly protein TraU -
CCS41_RS12885 () 2646292..2646921 - 630 WP_119797663.1 type-F conjugative transfer system protein TraW -
CCS41_RS12890 () 2646918..2647343 - 426 WP_119797664.1 type-F conjugative transfer system protein TrbI -
CCS41_RS12895 () 2647325..2649916 - 2592 WP_119797665.1 type IV secretion system protein TraC -
CCS41_RS12900 () 2649929..2650426 - 498 WP_119797666.1 type IV conjugative transfer system lipoprotein TraV -
CCS41_RS16180 () 2650583..2650735 - 153 WP_205411435.1 hypothetical protein -
CCS41_RS12905 () 2650774..2651838 - 1065 WP_205411436.1 conjugal transfer protein TraB -
CCS41_RS12910 () 2651841..2652563 - 723 WP_119797667.1 type-F conjugative transfer system secretin TraK -
CCS41_RS12915 () 2652550..2653116 - 567 WP_119797668.1 type IV conjugative transfer system protein TraE -
CCS41_RS12920 () 2653135..2653443 - 309 WP_119797669.1 type IV conjugative transfer system protein TraL -
CCS41_RS12925 () 2653470..2653796 - 327 WP_205411437.1 type IV conjugative transfer system pilin TraA -
CCS41_RS15750 () 2653959..2654102 - 144 WP_162860081.1 IS3 family transposase ISSlo2 Transposase
CCS41_RS12930 () 2654663..2656288 - 1626 WP_119797670.1 phage tail protein -
CCS41_RS12935 () 2656725..2658233 - 1509 WP_119797671.1 IS4 family transposase ISLpn5 Transposase
CCS41_RS12940 () 2658234..2658350 - 117 WP_162860082.1 transposase -
CCS41_RS12945 () 2658727..2659095 - 369 WP_072549715.1 IS630 family transposase ISTcSa Transposase
CCS41_RS12950 () 2659303..2659566 + 264 WP_119797673.1 IS5 family transposase ISCaa6 Transposase
CCS41_RS12955 () 2660297..2660683 + 387 WP_072550583.1 relaxosome protein TraM -
CCS41_RS12965 () 2661164..2661646 + 483 WP_083429617.1 IS5 family transposase ISNGR9 Transposase
CCS41_RS12970 () 2661913..2663010 - 1098 WP_072550584.1 Tyrosine recombinase XerC ; Integrase Integrase
CCS41_RS12975 () 2663102..2664148 + 1047 WP_072550614.1 tRNA dihydrouridine(20/20a) synthase DusA -
CCS41_RS12980 () 2664310..2665665 + 1356 WP_072550585.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
CCS41_RS12985 () 2666012..2666296 + 285 WP_072550586.1 hypothetical protein -
CCS41_RS12990 () 2666369..2667043 - 675 WP_072550587.1 nicotinate-nucleotide adenylyltransferase -
CCS41_RS12995 () 2667033..2668067 - 1035 WP_072550588.1 DNA polymerase III subunit delta -
CCS41_RS13000 () 2668064..2668633 - 570 WP_072550589.1 LPS assembly lipoprotein LptE -
CCS41_RS13005 () 2668644..2671226 - 2583 WP_072550590.1 leucine--tRNA ligase -
CCS41_RS13010 () 2671579..2672190 + 612 WP_072550591.1 hypothetical protein -
CCS41_RS13015 () 2672441..2673733 + 1293 WP_072550592.1 hypothetical protein -
CCS41_RS13020 () 2673967..2674809 - 843 WP_072550593.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
CCS41_RS13025 () 2675068..2675925 + 858 WP_072550594.1 RNA polymerase sigma factor RpoH -
CCS41_RS13030 () 2676800..2677231 + 432 WP_072550595.1 hypothetical protein VF
CCS41_RS13035 () 2677295..2677834 + 540 WP_119797675.1 hypothetical protein VF
CCS41_RS13040 () 2677892..2679631 + 1740 WP_072550597.1 hypothetical protein -
CCS41_RS13045 () 2679747..2681255 + 1509 WP_072550598.1 type II secretion system ATPase GspE -
CCS41_RS13050 () 2681242..2682447 + 1206 WP_119797676.1 type II secretion system inner membrane protein GspF -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance