MGE detailed information
MGE type: Conjugative plasmid MGE length: 92438 bp
Accession: NZ_CP021204 Location: 1..92438 Organism: Escherichia coli strain Z1002 Replicon: plasmid p1002-4
Accession: NZ_CP021204 Location: 1..92438 Organism: Escherichia coli strain Z1002 Replicon: plasmid p1002-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA268_RS27895 () | 924..2089 | + | 1166 | Protein_1 | Sporulation initiation inhibitor protein Soj | VF |
| CA268_RS27900 () | 2089..3060 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CA268_RS27915 () | 3927..4829 | + | 903 | WP_001507408.1 | DUF1281 domain-containing protein | - |
| CA268_RS27920 () | 4826..5137 | + | 312 | WP_032260558.1 | hypothetical protein | - |
| CA268_RS27925 () | 5213..5896 | + | 684 | WP_000086148.1 | DNA methylase | - |
| CA268_RS27930 () | 5897..6118 | + | 222 | WP_001104867.1 | hypothetical protein | - |
| CA268_RS27935 () | 6132..6566 | + | 435 | WP_029702191.1 | DUF1380 family protein | - |
| CA268_RS30380 () | 6617..7393 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| CA268_RS27950 () | 7933..8235 | + | 303 | WP_001436678.1 | antirestriction protein | - |
| CA268_RS27955 () | 8235..8696 | + | 462 | WP_051394489.1 | DUF1380 family protein | - |
| CA268_RS27960 () | 8696..8887 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| CA268_RS30815 () | 8866..9399 | - | 534 | Protein_12 | hypothetical protein | - |
| CA268_RS27975 () | 9916..10146 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CA268_RS27980 () | 10198..11559 | + | 1362 | WP_086352864.1 | DUF3560 domain-containing protein | - |
| CA268_RS27985 () | 11607..12170 | + | 564 | WP_029702196.1 | class I SAM-dependent methyltransferase | - |
| CA268_RS30845 () | 12167..12436 | + | 270 | WP_198320064.1 | hypothetical protein | - |
| CA268_RS28000 () | 13537..14106 | - | 570 | WP_089634947.1 | hypothetical protein | - |
| CA268_RS28015 () | 15410..16168 | + | 759 | Protein_19 | site-specific integrase | - |
| CA268_RS28020 () | 16326..17336 | + | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
| CA268_RS28025 () | 17432..19558 | + | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| CA268_RS28030 () | 19621..20898 | + | 1278 | WP_001083369.1 | MFS transporter | - |
| CA268_RS28035 () | 20895..22328 | + | 1434 | WP_024170639.1 | glycoside hydrolase family 32 protein | - |
| CA268_RS28040 () | 22523..23917 | + | 1395 | WP_001037799.1 | carbohydrate porin | - |
| CA268_RS28045 () | 24163..24267 | - | 105 | Protein_25 | thiosulfate reductase cytochrome B subunit | - |
| CA268_RS28055 () | 24324..25017 | + | 694 | Protein_26 | IS1 family transposase IS1A | Transposase |
| CA268_RS28060 () | 25033..25656 | + | 624 | WP_000912556.1 | potassium channel family protein | - |
| CA268_RS28065 () | 25741..25992 | + | 252 | Protein_28 | iron-containing alcohol dehydrogenase | - |
| CA268_RS28070 () | 26281..26598 | - | 318 | Protein_29 | IS110 family transposase | - |
| CA268_RS28075 () | 26753..26858 | + | 106 | Protein_30 | plasmid SOS inhibition protein A | - |
| - () | 26827..27025 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26827..27025 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26827..27025 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26827..27025 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| CA268_RS28080 () | 27090..27248 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CA268_RS30820 () | 27621..27914 | + | 294 | WP_175271036.1 | hypothetical protein | - |
| CA268_RS30725 () | 27916..28122 | + | 207 | WP_000275854.1 | hypothetical protein | - |
| CA268_RS28095 () | 28147..28434 | + | 288 | WP_000107242.1 | hypothetical protein | - |
| CA268_RS28100 () | 28553..29374 | + | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| CA268_RS28105 () | 29670..30242 | - | 573 | WP_000949660.1 | hypothetical protein | VF |
| CA268_RS28110 () | 30612..30995 | + | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| CA268_RS28115 () | 31186..31833 | + | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| CA268_RS28120 () | 31969..32184 | + | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| CA268_RS28125 () | 32227..32592 | + | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| CA268_RS28130 () | 32607..32918 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CA268_RS28135 () | 32940..33506 | + | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| CA268_RS28140 () | 33517..34221 | + | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| CA268_RS28145 () | 34221..35648 | + | 1428 | WP_001553836.1 | conjugal transfer protein TraB | - |
| CA268_RS28150 () | 35638..36228 | + | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| CA268_RS30415 () | 36215..36352 | + | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| CA268_RS28155 () | 36374..36535 | + | 162 | WP_000741714.1 | conjugal transfer protein TrbD | - |
| CA268_RS28160 () | 36528..36779 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| CA268_RS28165 () | 36776..37291 | + | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CA268_RS28170 () | 37426..37647 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| CA268_RS28175 () | 37807..40434 | + | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
| CA268_RS28180 () | 40431..40817 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| CA268_RS28185 () | 40814..41446 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CA268_RS28190 () | 41443..42435 | + | 993 | WP_001553833.1 | conjugal transfer pilus assembly protein TraU | - |
| CA268_RS28195 () | 42444..43082 | + | 639 | WP_001553832.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CA268_RS28200 () | 43079..44887 | + | 1809 | WP_001553831.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CA268_RS28205 () | 44914..45171 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| CA268_RS28210 () | 45164..45907 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CA268_RS28215 () | 45921..46262 | + | 342 | WP_000556794.1 | conjugal transfer protein TrbA | - |
| CA268_RS28220 () | 46243..46578 | - | 336 | WP_000415571.1 | hypothetical protein | - |
| CA268_RS28225 () | 46659..46943 | + | 285 | WP_000624105.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CA268_RS28230 () | 46930..47484 | + | 555 | WP_001553830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CA268_RS28235 () | 47414..47787 | + | 374 | Protein_63 | P-type conjugative transfer protein TrbJ | - |
| CA268_RS28240 () | 47741..48133 | + | 393 | WP_001553828.1 | F-type conjugal transfer protein TrbF | - |
| CA268_RS28245 () | 48120..49493 | + | 1374 | WP_001553827.1 | conjugal transfer protein TraH | - |
| CA268_RS28250 () | 49490..52315 | + | 2826 | WP_001553826.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CA268_RS28255 () | 52312..52767 | + | 456 | WP_001553825.1 | conjugal transfer entry exclusion protein TraS | - |
| CA268_RS28260 () | 52836..53567 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| CA268_RS28265 () | 53819..55999 | + | 2181 | WP_001553824.1 | type IV conjugative transfer system coupling protein TraD | - |
| CA268_RS28270 () | 55999..61269 | + | 5271 | WP_012372808.1 | Multifunctional conjugation protein TraI | Relaxase |
| CA268_RS28275 () | 61289..62035 | + | 747 | WP_000205701.1 | conjugal transfer pilus acetylase TraX | - |
| CA268_RS28280 () | 62090..62650 | + | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| CA268_RS28285 () | 62783..62995 | + | 213 | WP_005012601.1 | hypothetical protein | - |
| CA268_RS28295 () | 63296..63998 | - | 703 | Protein_74 | IS1 family transposase IS1S | Transposase |
| CA268_RS28305 () | 64099..64281 | + | 183 | WP_000968309.1 | hypothetical protein | - |
| - () | 64420..64481 | - | 62 | NuclAT_1 | - | - |
| - () | 64420..64481 | - | 62 | NuclAT_1 | - | - |
| - () | 64420..64481 | - | 62 | NuclAT_1 | - | - |
| - () | 64420..64481 | - | 62 | NuclAT_1 | - | - |
| CA268_RS28315 () | 64468..64674 | + | 207 | WP_015387399.1 | type I toxin-antitoxin system Hok family toxin | - |
| CA268_RS28320 () | 64958..65215 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| CA268_RS28330 () | 65451..65525 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CA268_RS28335 () | 65518..66375 | + | 858 | WP_000130948.1 | incFII family plasmid replication initiator RepA | - |
| CA268_RS30730 () | 67076..67216 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| CA268_RS28345 () | 67314..67967 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CA268_RS30420 () | 68060..68317 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CA268_RS28350 () | 68250..68651 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CA268_RS28355 () | 68936..70246 | + | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| CA268_RS28360 () | 70275..70373 | + | 99 | Protein_85 | IS1 family transposase | - |
| CA268_RS28365 () | 70523..71383 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CA268_RS28370 () | 71566..72123 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CA268_RS28380 () | 72393..73097 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CA268_RS28390 () | 73133..74005 | + | 873 | WP_085693684.1 | dihydrodipicolinate synthase family protein | - |
| CA268_RS28395 () | 74030..74410 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| CA268_RS28400 () | 74443..75408 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| CA268_RS28405 () | 75454..76206 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| CA268_RS28410 () | 76811..77095 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CA268_RS28415 () | 77095..77370 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CA268_RS28420 () | 77486..78183 | - | 698 | Protein_95 | IS1 family transposase IS1R | Transposase |
| CA268_RS28430 () | 78253..78546 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| CA268_RS30430 () | 78581..78709 | - | 129 | Protein_97 | IS481 family transposase | - |
| CA268_RS28435 () | 78742..79911 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| CA268_RS28445 () | 80404..80711 | + | 308 | Protein_99 | type II toxin-antitoxin system ParD family antitoxin | - |
| CA268_RS30435 () | 81054..81236 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| CA268_RS28460 () | 81357..82097 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| CA268_RS28465 () | 82382..83359 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| CA268_RS28475 () | 84146..84958 | + | 813 | WP_016236297.1 | hypothetical protein | - |
| CA268_RS28480 () | 85247..85495 | - | 249 | Protein_104 | abortive infection family protein | - |
| CA268_RS28490 () | 85553..86250 | + | 698 | Protein_105 | IS1 family transposase IS1R | Transposase |
| CA268_RS28500 () | 86379..87076 | + | 698 | Protein_106 | IS1 family transposase IS1R | Transposase |
| CA268_RS28505 () | 87276..88208 | - | 933 | WP_058682609.1 | hypothetical protein | - |
| CA268_RS28510 () | 88212..89207 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| CA268_RS28515 () | 89915..90133 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| CA268_RS28520 () | 90135..90440 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | - |
| CA268_RS28525 () | 90441..91247 | + | 807 | WP_000016982.1 | site-specific integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|