MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134646 bp
Accession: NZ_CP021109 Location: 331398..466043 Organism: Bordetella genomosp. 9 strain AU17164 Replicon: chromosome
Accession: NZ_CP021109 Location: 331398..466043 Organism: Bordetella genomosp. 9 strain AU17164 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAL13_RS01460 () | 327685..327885 | - | 201 | WP_086059167.1 | sulfur carrier protein ThiS | - |
| CAL13_RS01465 () | 327904..328854 | - | 951 | WP_086071287.1 | prolyl aminopeptidase | - |
| CAL13_RS01470 () | 328854..329627 | - | 774 | WP_086055924.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| CAL13_RS01480 () | 330109..332034 | + | 1926 | WP_086071288.1 | tyrosine-type recombinase/integrase | - |
| CAL13_RS01485 () | 332062..332685 | - | 624 | WP_086071289.1 | LysR family substrate-binding domain-containing protein | - |
| CAL13_RS01490 () | 332790..333089 | + | 300 | WP_027350562.1 | helix-turn-helix domain-containing protein | - |
| CAL13_RS01495 () | 333210..333659 | + | 450 | WP_086073464.1 | Rrf2 family transcriptional regulator | - |
| CAL13_RS01500 () | 333656..334579 | + | 924 | WP_086071290.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CAL13_RS01505 () | 334576..335250 | + | 675 | WP_121372618.1 | class I SAM-dependent methyltransferase | - |
| CAL13_RS01510 () | 335316..337112 | - | 1797 | WP_032958330.1 | TraI domain-containing protein | - |
| CAL13_RS01515 () | 337447..337665 | + | 219 | WP_006489017.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CAL13_RS01520 () | 337665..338078 | + | 414 | WP_062737769.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| CAL13_RS01525 () | 338135..338512 | + | 378 | WP_062737770.1 | DUF3742 family protein | - |
| CAL13_RS01530 () | 338530..340047 | - | 1518 | WP_086071291.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| CAL13_RS01535 () | 340061..340411 | - | 351 | WP_086071292.1 | hypothetical protein | - |
| CAL13_RS01540 () | 340408..341802 | - | 1395 | WP_043223424.1 | integrating conjugative element protein | - |
| CAL13_RS01545 () | 341814..342764 | - | 951 | WP_086071293.1 | TIGR03756 family integrating conjugative element protein | - |
| CAL13_RS01550 () | 342761..343198 | - | 438 | WP_032958302.1 | TIGR03757 family integrating conjugative element protein | - |
| CAL13_RS01555 () | 343513..343668 | - | 156 | Protein_306 | type I methionyl aminopeptidase | - |
| CAL13_RS01560 () | 343728..344533 | + | 806 | WP_130531530.1 | IS5 family transposase | - |
| CAL13_RS01565 () | 344669..345472 | - | 804 | WP_027350552.1 | sulfite exporter TauE/SafE family protein | - |
| CAL13_RS01570 () | 345579..346364 | + | 786 | WP_027350551.1 | HTH-type transcriptional regulator NimR | VF |
| CAL13_RS01575 () | 346536..347168 | - | 633 | Protein_310 | 3-isopropylmalate dehydratase small subunit | - |
| CAL13_RS01580 () | 347165..348583 | - | 1419 | WP_043223483.1 | 3-isopropylmalate dehydratase large subunit | - |
| CAL13_RS01585 () | 348602..349480 | - | 879 | WP_086071294.1 | alpha/beta hydrolase | - |
| CAL13_RS01590 () | 349584..350501 | + | 918 | WP_086071295.1 | HTH-type transcriptional regulator DmlR | VF |
| CAL13_RS01595 () | 350982..351671 | + | 690 | WP_086071296.1 | glutathione S-transferase | - |
| CAL13_RS01600 () | 351755..352330 | + | 576 | WP_024128187.1 | TetR/AcrR family transcriptional regulator | - |
| CAL13_RS01605 () | 352472..353398 | - | 927 | WP_086071297.1 | HTH-type transcriptional regulator DmlR | VF |
| CAL13_RS01610 () | 353528..354316 | + | 789 | WP_086071298.1 | alpha/beta hydrolase | - |
| CAL13_RS21100 () | 354419..354661 | + | 243 | WP_052754977.1 | hypothetical protein | - |
| CAL13_RS01615 () | 354790..355557 | - | 768 | WP_001554377.1 | type I methionyl aminopeptidase | - |
| CAL13_RS01620 () | 355554..355766 | - | 213 | WP_009618131.1 | ParD-like family protein | - |
| CAL13_RS01625 () | 356009..356401 | - | 393 | WP_001554375.1 | nuclear transport factor 2 family protein | - |
| CAL13_RS01630 () | 356516..357432 | + | 917 | Protein_322 | LysR family transcriptional regulator | - |
| CAL13_RS01635 () | 357506..359038 | + | 1533 | WP_086071299.1 | IS21 family transposase ISRsp3 | Transposase |
| CAL13_RS01640 () | 359028..359822 | + | 795 | WP_086071300.1 | IS21 family transposase ISRsp3 | Transposase |
| CAL13_RS01645 () | 359837..360571 | - | 735 | WP_198297888.1 | MFS transporter | - |
| CAL13_RS01650 () | 360630..360833 | + | 204 | WP_062737779.1 | ribbon-helix-helix protein, CopG family | - |
| CAL13_RS01655 () | 360830..361192 | + | 363 | WP_032972548.1 | glyoxalase | - |
| CAL13_RS01660 () | 361192..362049 | + | 858 | WP_032972751.1 | class I SAM-dependent methyltransferase | - |
| CAL13_RS01665 () | 362046..362666 | - | 621 | WP_043223441.1 | hypothetical protein | - |
| CAL13_RS01670 () | 362681..363217 | - | 537 | WP_198297889.1 | MarR family transcriptional regulator | - |
| CAL13_RS01675 () | 363243..363707 | + | 465 | WP_043223445.1 | hypothetical protein | - |
| CAL13_RS01680 () | 363754..364380 | + | 627 | WP_032963801.1 | LysE family translocator | - |
| CAL13_RS01685 () | 364399..365529 | - | 1131 | WP_080701648.1 | alpha/beta fold hydrolase | - |
| CAL13_RS01690 () | 365552..366460 | - | 909 | WP_086071302.1 | alpha/beta hydrolase | - |
| CAL13_RS01695 () | 366550..366915 | + | 366 | WP_086071303.1 | MerR family transcriptional regulator | - |
| CAL13_RS01700 () | 367084..367194 | - | 111 | Protein_336 | IS3 family transposase | - |
| CAL13_RS01705 () | 367213..367416 | - | 204 | WP_032972754.1 | MerR family DNA-binding transcriptional regulator | - |
| CAL13_RS01710 () | 367568..368569 | - | 1002 | WP_198297890.1 | HTH-type transcriptional regulator CdhR | VF |
| CAL13_RS01715 () | 368727..369095 | + | 369 | WP_027350538.1 | DUF3817 domain-containing protein | - |
| CAL13_RS01720 () | 369098..369520 | + | 423 | WP_086073466.1 | CopD family protein | - |
| CAL13_RS01725 () | 369616..370518 | + | 903 | WP_012492785.1 | LysR family transcriptional regulator | - |
| CAL13_RS01735 () | 371086..371877 | - | 792 | WP_198297891.1 | thioredoxin domain-containing protein | - |
| CAL13_RS01740 () | 371890..374769 | - | 2880 | WP_086071305.1 | conjugative transfer ATPase | - |
| CAL13_RS01745 () | 374769..375200 | - | 432 | WP_086071306.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| CAL13_RS01750 () | 375181..376599 | - | 1419 | WP_086071307.1 | TIGR03752 family integrating conjugative element protein | - |
| CAL13_RS21105 () | 376589..376705 | - | 117 | Protein_346 | TIGR03749 family integrating conjugative element protein | - |
| CAL13_RS01755 () | 376746..377690 | + | 945 | WP_086071308.1 | ATP-dependent zinc metalloprotease FtsH 3 | VF |
| CAL13_RS01760 () | 377852..378070 | + | 219 | Protein_348 | hypothetical protein | - |
| CAL13_RS01765 () | 378307..378825 | + | 519 | WP_086071309.1 | hypothetical protein | - |
| CAL13_RS01770 () | 378970..379380 | + | 411 | WP_086071310.1 | hypothetical protein | - |
| CAL13_RS01775 () | 379546..381075 | + | 1530 | WP_086071311.1 | sensor domain-containing diguanylate cyclase | - |
| CAL13_RS01780 () | 381429..382004 | - | 576 | WP_086071312.1 | PIN domain-containing protein | Toxin Detail |
| CAL13_RS01785 () | 382001..382468 | - | 468 | WP_086071313.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CAL13_RS01795 () | 383293..385833 | - | 2541 | WP_086071314.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CAL13_RS01805 () | 387033..387449 | - | 417 | WP_086071315.1 | hypothetical protein | - |
| CAL13_RS01810 () | 387695..390208 | - | 2514 | WP_086071316.1 | response regulator | - |
| CAL13_RS01815 () | 390205..390909 | - | 705 | WP_086073468.1 | Transcriptional regulatory protein RcsB | VF |
| CAL13_RS01820 () | 391259..392299 | + | 1041 | WP_157664775.1 | M23 family metallopeptidase | - |
| CAL13_RS01825 () | 392347..393330 | + | 984 | WP_157664776.1 | glycosyltransferase family 2 protein | - |
| CAL13_RS01830 () | 393601..394857 | + | 1257 | WP_086071319.1 | putative Na+/H+ antiporter | - |
| CAL13_RS01835 () | 394993..396186 | + | 1194 | WP_086071320.1 | sodium/glutamate symporter | - |
| CAL13_RS01840 () | 396805..398244 | + | 1440 | WP_086071321.1 | chitinase | - |
| CAL13_RS01845 () | 398310..399656 | + | 1347 | WP_086073469.1 | lytic polysaccharide monooxygenase | - |
| CAL13_RS01850 () | 399777..400544 | - | 768 | WP_086071322.1 | carbonic anhydrase family protein | - |
| CAL13_RS01860 () | 401225..402574 | + | 1350 | WP_086071324.1 | thioredoxin family protein | - |
| CAL13_RS21110 () | 403268..404233 | - | 966 | WP_157664777.1 | hypothetical protein | - |
| CAL13_RS01870 () | 404329..405036 | - | 708 | WP_086071326.1 | Transcriptional regulatory protein RcsB | VF |
| CAL13_RS21115 () | 405100..406359 | - | 1260 | WP_157664778.1 | hypothetical protein | - |
| CAL13_RS01880 () | 406378..408831 | - | 2454 | WP_198297892.1 | CS1-pili formation C-terminal domain-containing protein | - |
| CAL13_RS01885 () | 408962..409444 | - | 483 | WP_086071329.1 | hypothetical protein | - |
| CAL13_RS01890 () | 409506..410264 | - | 759 | WP_198297893.1 | hypothetical protein | - |
| CAL13_RS01895 () | 411004..411756 | + | 753 | WP_157664779.1 | FkbM family methyltransferase | - |
| CAL13_RS01900 () | 412073..413317 | + | 1245 | WP_086071332.1 | Phytochrome-like protein cph2 | VF |
| CAL13_RS01905 () | 413816..414301 | - | 486 | WP_157664780.1 | hypothetical protein | - |
| CAL13_RS01910 () | 414874..415135 | - | 262 | Protein_376 | hypothetical protein ; Integrase | Integrase |
| CAL13_RS01915 () | 415491..415790 | - | 300 | WP_086073470.1 | DNA-binding protein Bv3F | VF |
| CAL13_RS21120 () | 415971..416288 | + | 318 | WP_157664781.1 | hypothetical protein | - |
| CAL13_RS01925 () | 416783..418390 | - | 1608 | WP_086071335.1 | hypothetical protein | - |
| CAL13_RS01930 () | 418850..419023 | - | 174 | WP_157664782.1 | hypothetical protein | - |
| CAL13_RS01935 () | 419419..420195 | - | 777 | WP_086071337.1 | class I SAM-dependent methyltransferase | - |
| CAL13_RS01940 () | 420349..421257 | - | 909 | WP_086071338.1 | LysR family transcriptional regulator | - |
| CAL13_RS01945 () | 421630..422451 | - | 822 | WP_086071339.1 | IS3 family transposase ISKpn40 | Transposase |
| CAL13_RS01950 () | 422448..422702 | - | 255 | WP_198297894.1 | IS3 family transposase ISKpn40 | Transposase |
| CAL13_RS01955 () | 422725..423372 | + | 648 | Protein_385 | conjugal transfer protein TrbE | - |
| CAL13_RS01960 () | 423369..424094 | + | 726 | WP_023087421.1 | P-type conjugative transfer protein TrbJ | - |
| CAL13_RS01965 () | 424107..424427 | + | 321 | WP_086071340.1 | EexN family lipoprotein | - |
| CAL13_RS01970 () | 424424..425809 | + | 1386 | WP_086071341.1 | P-type conjugative transfer protein TrbL | - |
| CAL13_RS01975 () | 425822..426526 | + | 705 | WP_086071342.1 | conjugal transfer protein TrbF | - |
| CAL13_RS01980 () | 426523..427515 | + | 993 | Protein_390 | P-type conjugative transfer protein TrbG | - |
| CAL13_RS01985 () | 427518..428513 | + | 996 | Protein_391 | Type IV secretion system protein virB10 | VF |
| CAL13_RS01990 () | 428513..428728 | - | 216 | Protein_392 | hypothetical protein | - |
| CAL13_RS01995 () | 428839..429144 | - | 306 | WP_086071343.1 | hypothetical protein | - |
| CAL13_RS02000 () | 429247..430356 | - | 1110 | WP_086071344.1 | SAM-dependent methyltransferase | - |
| CAL13_RS02005 () | 430426..431076 | - | 651 | WP_086071345.1 | hypothetical protein | - |
| CAL13_RS02010 () | 431161..431526 | - | 366 | WP_086071346.1 | hypothetical protein | - |
| CAL13_RS02015 () | 431616..432227 | - | 612 | WP_086071347.1 | DUF3275 family protein | - |
| CAL13_RS02020 () | 432283..432846 | - | 564 | WP_086071348.1 | DUF3577 domain-containing protein | - |
| CAL13_RS02025 () | 433191..433556 | - | 366 | WP_086071349.1 | DUF3085 domain-containing protein | - |
| CAL13_RS02030 () | 433622..434419 | - | 798 | WP_086071350.1 | GTPase | - |
| CAL13_RS02035 () | 434711..435427 | - | 717 | WP_016446172.1 | hypothetical protein | - |
| CAL13_RS02040 () | 435678..436070 | - | 393 | WP_086071351.1 | hypothetical protein | - |
| CAL13_RS02045 () | 436095..436346 | - | 252 | WP_086071352.1 | hypothetical protein | - |
| CAL13_RS02050 () | 437154..439184 | - | 2031 | WP_086071353.1 | DNA topoisomerase III | - |
| CAL13_RS02055 () | 439480..439863 | - | 384 | WP_086071354.1 | single-stranded DNA-binding protein | - |
| CAL13_RS02060 () | 439860..440408 | - | 549 | WP_086071355.1 | DUF3158 family protein | - |
| CAL13_RS02065 () | 440405..441184 | - | 780 | WP_086071356.1 | TIGR03761 family integrating conjugative element protein | - |
| CAL13_RS02070 () | 441308..441499 | - | 192 | WP_027350501.1 | hypothetical protein | - |
| CAL13_RS02075 () | 441528..441815 | - | 288 | WP_086071357.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CAL13_RS02080 () | 441802..442101 | - | 300 | WP_086071358.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| CAL13_RS02085 () | 442229..443425 | - | 1197 | WP_086071359.1 | hypothetical protein | - |
| CAL13_RS02090 () | 443428..443988 | - | 561 | WP_004255086.1 | DUF2857 domain-containing protein | - |
| CAL13_RS02095 () | 444006..445664 | - | 1659 | WP_086071360.1 | ParB N-terminal domain-containing protein | - |
| CAL13_RS02100 () | 445657..445905 | - | 249 | WP_048939778.1 | hypothetical protein | - |
| CAL13_RS02105 () | 445889..446755 | - | 867 | WP_086071361.1 | Chromosome partitioning protein ParA | VF |
| CAL13_RS02110 () | 446797..447015 | - | 219 | WP_009461157.1 | AlpA family transcriptional regulator | - |
| CAL13_RS02115 () | 447126..447887 | - | 762 | WP_086071362.1 | hypothetical protein | - |
| CAL13_RS02120 () | 448631..449050 | + | 420 | WP_086071363.1 | helix-turn-helix domain-containing protein | - |
| CAL13_RS02125 () | 449185..449973 | + | 789 | WP_086071364.1 | TIGR04255 family protein | - |
| CAL13_RS02130 () | 449988..450632 | + | 645 | WP_086073471.1 | transcriptional regulator | - |
| CAL13_RS02135 () | 450648..451502 | + | 855 | WP_086071365.1 | hypothetical protein | - |
| CAL13_RS02140 () | 452015..453244 | + | 1230 | WP_086071366.1 | MFS transporter | - |
| CAL13_RS02145 () | 453679..453954 | + | 276 | WP_086073472.1 | hypothetical protein | - |
| CAL13_RS02150 () | 453984..455189 | - | 1206 | WP_086071367.1 | ABC transporter substrate-binding protein | - |
| CAL13_RS02155 () | 455234..455959 | - | 726 | WP_086071368.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| CAL13_RS02160 () | 455949..456827 | - | 879 | WP_086071369.1 | ABC transporter permease | - |
| CAL13_RS02165 () | 456824..457759 | - | 936 | WP_086055929.1 | TauD/TfdA family dioxygenase | - |
| CAL13_RS02170 () | 457985..458815 | + | 831 | WP_086071370.1 | class I SAM-dependent methyltransferase | - |
| CAL13_RS02175 () | 458865..459779 | - | 915 | WP_086055931.1 | LysR family transcriptional regulator | - |
| CAL13_RS02180 () | 459970..460896 | + | 927 | WP_086071371.1 | hydroxymethylglutaryl-CoA lyase | - |
| CAL13_RS02185 () | 460984..461880 | - | 897 | WP_086055933.1 | LysR family transcriptional regulator | - |
| CAL13_RS02190 () | 462041..465151 | + | 3111 | WP_086071372.1 | FAD-binding oxidoreductase | - |
| CAL13_RS02195 () | 465091..466071 | - | 981 | WP_086059169.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| CAL13_RS02200 () | 466325..467143 | - | 819 | WP_086071373.1 | IclR family transcriptional regulator | - |
| CAL13_RS02210 () | 467448..468236 | + | 789 | WP_086073473.1 | enoyl-CoA hydratase | - |
| CAL13_RS02215 () | 468290..469189 | + | 900 | WP_086071375.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| CAL13_RS02220 () | 469193..469861 | + | 669 | WP_086071376.1 | 3-oxoacid CoA-transferase subunit A | - |
| CAL13_RS02225 () | 469858..470568 | + | 711 | WP_086071377.1 | 3-oxoacid CoA-transferase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|