MGE detailed information
MGE type: Prophage MGE length: 66610 bp
Accession: NZ_CP020753 Location: 2032882..2099491 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 2032882..2099491 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS10660 () | 2028306..2030000 | - | 1695 | Protein_2064 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| B7485_RS10665 () | 2030171..2030353 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| B7485_RS10670 () | 2030432..2031349 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| B7485_RS10675 () | 2031522..2032442 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| B7485_RS10680 () | 2032431..2032901 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| B7485_RS10685 () | 2032882..2034300 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| B7485_RS10690 () | 2034367..2034907 | - | 541 | Protein_2070 | phosphohydrolase | - |
| B7485_RS10695 () | 2034947..2035204 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| B7485_RS10705 () | 2036418..2037182 | + | 765 | Protein_2073 | porin | - |
| B7485_RS10715 () | 2038513..2038692 | + | 180 | Protein_2075 | porin | - |
| B7485_RS10720 () | 2039320..2040017 | + | 698 | WP_232111816.1 | IS1 family transposase | - |
| B7485_RS10725 () | 2040029..2040976 | - | 948 | Protein_2077 | two-component system sensor histidine kinase HprS | - |
| B7485_RS10730 () | 2040976..2041647 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| B7485_RS10735 () | 2041780..2042193 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| B7485_RS10740 () | 2042302..2043306 | + | 1005 | Protein_2080 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| B7485_RS10745 () | 2043307..2043942 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| B7485_RS10750 () | 2044200..2044850 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| B7485_RS10760 () | 2045928..2046197 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| B7485_RS10765 () | 2046254..2046922 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| B7485_RS10770 () | 2047238..2048881 | + | 1644 | WP_134800209.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| B7485_RS10780 () | 2049061..2049540 | - | 480 | Protein_2086 | DUF4376 domain-containing protein | - |
| B7485_RS10785 () | 2049581..2050438 | - | 858 | Protein_2087 | IS3-like element IS600 family transposase | - |
| B7485_RS10790 () | 2050496..2051193 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS10795 () | 2051205..2051396 | - | 192 | Protein_2089 | helix-turn-helix domain-containing protein | - |
| B7485_RS10800 () | 2051495..2051710 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| B7485_RS10830 () | 2052506..2053194 | - | 689 | Protein_2091 | bacteriophage antitermination protein Q | - |
| B7485_RS10835 () | 2053191..2053556 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B7485_RS10840 () | 2053557..2054615 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| B7485_RS10845 () | 2054617..2054895 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| B7485_RS10855 () | 2055063..2055218 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| B7485_RS10870 () | 2055870..2056286 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| B7485_RS10875 () | 2056313..2056453 | + | 141 | Protein_2097 | DUF4224 domain-containing protein | - |
| B7485_RS10880 () | 2056453..2057503 | + | 1051 | Protein_2098 | tyrosine-type recombinase/integrase | - |
| B7485_RS10890 () | 2057714..2058511 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| B7485_RS10900 () | 2058849..2060111 | + | 1263 | Protein_2100 | tyrosine-type recombinase/integrase | - |
| B7485_RS10905 () | 2060218..2061386 | - | 1169 | Protein_2101 | IS3-like element IS911 family transposase | - |
| B7485_RS10910 () | 2061442..2061948 | + | 507 | Protein_2102 | MFS transporter | - |
| B7485_RS10915 () | 2062013..2063169 | + | 1157 | WP_134796890.1 | IS3 family transposase | - |
| B7485_RS10925 () | 2063213..2063629 | + | 417 | Protein_2104 | transposase | - |
| B7485_RS10930 () | 2063659..2064012 | + | 354 | Protein_2105 | tyrosine-type recombinase/integrase | - |
| B7485_RS10940 () | 2064064..2064450 | - | 387 | Protein_2106 | integrase core domain-containing protein | - |
| B7485_RS10945 () | 2064484..2066083 | - | 1600 | Protein_2107 | IS66-like element ISSfl3 family transposase | - |
| B7485_RS25190 () | 2066080..2066259 | - | 180 | Protein_2108 | IS66 family insertion sequence element accessory protein TnpB | - |
| B7485_RS10955 () | 2066315..2067522 | + | 1208 | Protein_2109 | IS3 family transposase | - |
| B7485_RS10960 () | 2067567..2067734 | - | 168 | Protein_2110 | IS66 family insertion sequence element accessory protein TnpB | - |
| B7485_RS10965 () | 2067736..2068401 | - | 666 | Protein_2111 | IS66-like element accessory protein TnpA | - |
| B7485_RS10970 () | 2068482..2069314 | - | 833 | Protein_2112 | integrase family protein | - |
| B7485_RS10975 () | 2069496..2070919 | + | 1424 | Protein_2113 | exodeoxyribonuclease I | - |
| B7485_RS10980 () | 2070916..2071184 | - | 269 | Protein_2114 | sulfurtransferase TusA family protein | - |
| B7485_RS10985 () | 2071613..2071881 | - | 269 | Protein_2115 | tail fiber assembly protein | - |
| B7485_RS25195 () | 2071938..2072603 | + | 666 | Protein_2116 | class I SAM-dependent methyltransferase | - |
| B7485_RS11000 () | 2072917..2074558 | + | 1642 | Protein_2117 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| B7485_RS11010 () | 2074738..2075217 | - | 480 | Protein_2118 | DUF4376 domain-containing protein | - |
| B7485_RS11015 () | 2075257..2076114 | - | 858 | Protein_2119 | IS3-like element IS600 family transposase | - |
| B7485_RS11020 () | 2076172..2076869 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS11025 () | 2076881..2077072 | - | 192 | Protein_2121 | helix-turn-helix domain-containing protein | - |
| B7485_RS11030 () | 2077171..2077386 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| B7485_RS11060 () | 2078182..2078870 | - | 689 | Protein_2123 | bacteriophage antitermination protein Q | - |
| B7485_RS11065 () | 2078867..2079232 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B7485_RS11070 () | 2079233..2080291 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| B7485_RS11075 () | 2080293..2080571 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| B7485_RS11085 () | 2080739..2080894 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2080906..2080964 | + | 59 | - | - | Antitoxin Detail |
| B7485_RS11100 () | 2081546..2081962 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| B7485_RS11105 () | 2081989..2082129 | + | 141 | Protein_2129 | DUF4224 domain-containing protein | - |
| B7485_RS11110 () | 2082129..2083179 | + | 1051 | Protein_2130 | tyrosine-type recombinase/integrase | - |
| B7485_RS11120 () | 2083390..2084187 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| B7485_RS11130 () | 2084525..2085787 | + | 1263 | Protein_2132 | tyrosine-type recombinase/integrase | - |
| B7485_RS11135 () | 2085894..2087062 | - | 1169 | Protein_2133 | IS3-like element IS911 family transposase | - |
| B7485_RS11140 () | 2087118..2087624 | + | 507 | Protein_2134 | MFS transporter | - |
| B7485_RS11145 () | 2087689..2088845 | + | 1157 | WP_134796890.1 | IS3 family transposase | - |
| B7485_RS11155 () | 2088889..2089305 | + | 417 | Protein_2136 | transposase | - |
| B7485_RS11160 () | 2089335..2089688 | + | 354 | Protein_2137 | tyrosine-type recombinase/integrase | - |
| B7485_RS11170 () | 2089740..2090126 | - | 387 | Protein_2138 | integrase core domain-containing protein | - |
| B7485_RS11175 () | 2090160..2091761 | - | 1602 | WP_011110603.1 | IS66-like element ISSfl3 family transposase | - |
| B7485_RS25200 () | 2091758..2091937 | - | 180 | Protein_2140 | IS66 family insertion sequence element accessory protein TnpB | - |
| B7485_RS11185 () | 2091993..2093202 | + | 1210 | Protein_2141 | IS3 family transposase | - |
| B7485_RS11190 () | 2093247..2093417 | - | 171 | Protein_2142 | IS66 family insertion sequence element accessory protein TnpB | - |
| B7485_RS11195 () | 2093414..2094088 | - | 675 | WP_004967157.1 | IS66-like element accessory protein TnpA | - |
| B7485_RS11200 () | 2094170..2095006 | - | 837 | Protein_2144 | integrase family protein | - |
| B7485_RS11205 () | 2095188..2096612 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| B7485_RS11210 () | 2096655..2096882 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| B7485_RS11215 () | 2096896..2097954 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| B7485_RS11220 () | 2098133..2099491 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| B7485_RS11225 () | 2099481..2099543 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| B7485_RS11230 () | 2099704..2100687 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| B7485_RS11235 () | 2100733..2101557 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| B7485_RS11240 () | 2101640..2101894 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| B7485_RS11250 () | 2102647..2102919 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| B7485_RS11265 () | 2103389..2104288 | + | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|