MGE detailed information
MGE type: Conjugative plasmid MGE length: 120668 bp
Accession: NZ_CP020496 Location: 1..120668 Organism: Escherichia coli strain 103 Replicon: plasmid unnamed1
Accession: NZ_CP020496 Location: 1..120668 Organism: Escherichia coli strain 103 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPA47_RS25515 () | 1560..1718 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 1762..1800 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1762..1800 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1762..1800 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1762..1800 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 3240..3342 | - | 103 | NuclAT_0 | - | - |
| - () | 3240..3342 | - | 103 | NuclAT_0 | - | - |
| - () | 3240..3342 | - | 103 | NuclAT_0 | - | - |
| - () | 3240..3342 | - | 103 | NuclAT_0 | - | - |
| CPA47_RS25525 () | 3354..4073 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CPA47_RS25530 () | 4070..4504 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CPA47_RS25535 () | 4559..6517 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CPA47_RS25540 () | 6583..6816 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| CPA47_RS25545 () | 6879..7376 | - | 498 | WP_042045560.1 | single-stranded DNA-binding protein | - |
| CPA47_RS25550 () | 7526..9427 | - | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| CPA47_RS25570 () | 11283..12950 | + | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| CPA47_RS26880 () | 13065..13277 | - | 213 | WP_001348622.1 | hypothetical protein | - |
| CPA47_RS25580 () | 13303..13866 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CPA47_RS25585 () | 13914..15275 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CPA47_RS25590 () | 15327..15557 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CPA47_RS25600 () | 16954..18621 | + | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| CPA47_RS25605 () | 18935..19126 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CPA47_RS25610 () | 19123..19545 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CPA47_RS25615 () | 19592..19894 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CPA47_RS25625 () | 20434..21210 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| CPA47_RS25630 () | 21261..21695 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CPA47_RS25635 () | 21709..21930 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CPA47_RS25640 () | 21931..22614 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CPA47_RS25645 () | 22691..22995 | - | 305 | Protein_22 | hypothetical protein | - |
| CPA47_RS25650 () | 22999..23901 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CPA47_RS25665 () | 24768..25739 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CPA47_RS25670 () | 25739..26905 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CPA47_RS25675 () | 27493..28248 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CPA47_RS25680 () | 29022..29828 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| CPA47_RS25685 () | 29829..30134 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CPA47_RS25690 () | 30136..30354 | - | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CPA47_RS25695 () | 30988..31185 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| CPA47_RS25700 () | 31182..31466 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| CPA47_RS25705 () | 31486..32619 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CPA47_RS25710 () | 32882..36001 | - | 3120 | WP_023909028.1 | hypothetical protein | - |
| CPA47_RS25720 () | 36308..36538 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CPA47_RS25725 () | 36535..36951 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CPA47_RS25730 () | 37113..39251 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| CPA47_RS25735 () | 39716..40711 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| CPA47_RS25740 () | 40715..41647 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| CPA47_RS25745 () | 41784..42481 | - | 698 | Protein_39 | IS1 family transposase IS1G | Transposase |
| CPA47_RS25750 () | 42695..45811 | - | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| CPA47_RS25755 () | 45933..47204 | - | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| CPA47_RS25760 () | 47201..48757 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| CPA47_RS25765 () | 48940..49161 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CPA47_RS25770 () | 49161..49541 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CPA47_RS25775 () | 49546..49725 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| CPA47_RS25780 () | 49753..50112 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| CPA47_RS25785 () | 50036..50449 | + | 414 | Protein_47 | IS3 family transposase ISLad1 | Transposase |
| CPA47_RS25795 () | 51245..52222 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CPA47_RS25800 () | 52507..53247 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| CPA47_RS25805 () | 53368..53550 | - | 183 | WP_042065278.1 | hypothetical protein | - |
| CPA47_RS25815 () | 53893..54200 | - | 308 | Protein_51 | type II toxin-antitoxin system ParD family antitoxin | - |
| CPA47_RS25825 () | 54693..55862 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| CPA47_RS25830 () | 55895..56023 | + | 129 | Protein_53 | IS481 family transposase | - |
| CPA47_RS25835 () | 56058..56252 | - | 195 | WP_086258557.1 | hypothetical protein | - |
| CPA47_RS25840 () | 56294..56991 | + | 698 | Protein_55 | IS1 family transposase IS1R | Transposase |
| CPA47_RS25845 () | 57007..57126 | + | 120 | Protein_56 | ArsR family transcriptional regulator | - |
| CPA47_RS25850 () | 57104..57727 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| CPA47_RS25855 () | 57809..59014 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| CPA47_RS25860 () | 59127..59720 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| CPA47_RS25865 () | 59853..60224 | + | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| CPA47_RS25870 () | 60234..60755 | - | 522 | Protein_61 | IS4 family transposase IS10R | Transposase |
| CPA47_RS25875 () | 60762..60950 | - | 189 | Protein_62 | IS1 family transposase | - |
| CPA47_RS25880 () | 61015..61719 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CPA47_RS25885 () | 61765..62412 | - | 648 | Protein_64 | IS91 family transposase ISAzo26 | Transposase |
| CPA47_RS25890 () | 62570..63043 | + | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| CPA47_RS25895 () | 63174..63962 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CPA47_RS25900 () | 64168..64515 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CPA47_RS25905 () | 64509..65348 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CPA47_RS25915 () | 65476..65679 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CPA47_RS25920 () | 65835..66200 | + | 366 | Protein_70 | chromate transporter | - |
| CPA47_RS25925 () | 66254..66958 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CPA47_RS25930 () | 67041..67901 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CPA47_RS25935 () | 68048..70519 | - | 2472 | Protein_73 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| CPA47_RS25940 () | 70522..71082 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| CPA47_RS25945 () | 71095..71415 | + | 321 | Protein_75 | IS1380 family transposase ISEcp1 | Transposase |
| CPA47_RS25950 () | 71655..72296 | + | 642 | WP_000134999.1 | MBL fold metallo-hydrolase | - |
| CPA47_RS26885 () | 72521..73192 | - | 672 | Protein_77 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| CPA47_RS25960 () | 73256..73960 | + | 705 | WP_001067855.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| CPA47_RS25965 () | 74342..75217 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| CPA47_RS25970 () | 75264..75596 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| CPA47_RS25975 () | 75610..77853 | + | 2244 | Protein_81 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CPA47_RS25980 () | 77918..78622 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CPA47_RS25985 () | 78676..79116 | - | 441 | Protein_83 | CatB-related O-acetyltransferase | - |
| CPA47_RS25990 () | 79254..80084 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| CPA47_RS25995 () | 80215..80769 | - | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| CPA47_RS26000 () | 80913..81617 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CPA47_RS26005 () | 81683..82195 | + | 513 | Protein_87 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CPA47_RS26010 () | 82219..82824 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| CPA47_RS26015 () | 82919..85816 | + | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| CPA47_RS26020 () | 85953..86354 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CPA47_RS26025 () | 86287..86544 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CPA47_RS26030 () | 86637..87290 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CPA47_RS26800 () | 87388..87528 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| CPA47_RS26040 () | 88230..89087 | - | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| CPA47_RS26045 () | 89080..89154 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| CPA47_RS26890 () | 89151..89285 | - | 135 | Protein_96 | protein CopA/IncA | - |
| CPA47_RS26050 () | 89411..90624 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| CPA47_RS26055 () | 90829..92370 | + | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| CPA47_RS26060 () | 92385..93131 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CPA47_RS26065 () | 93291..93545 | - | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| CPA47_RS26070 () | 93842..93976 | - | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 94021..94081 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 94021..94081 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 94021..94081 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 94021..94081 | + | 61 | NuclAT_2 | - | Antitoxin Detail |
| CPA47_RS26805 () | 94048..94334 | - | 287 | Protein_102 | DUF2726 domain-containing protein | - |
| CPA47_RS26085 () | 94847..95059 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| CPA47_RS26090 () | 95190..95750 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| CPA47_RS26095 () | 95805..96551 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CPA47_RS26100 () | 96571..99027 | - | 2457 | Protein_106 | Multifunctional conjugation protein TraI | Relaxase |
| CPA47_RS26105 () | 99088..99792 | + | 705 | WP_001067858.1 | Multifunctional conjugation protein TraI | Relaxase |
| CPA47_RS26110 () | 99847..100692 | - | 846 | Protein_108 | IS4 family transposase IS10R | Transposase |
| CPA47_RS26115 () | 100802..101764 | - | 963 | Protein_109 | IS4 family transposase IS10R | Transposase |
| CPA47_RS26120 () | 101907..102767 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CPA47_RS26125 () | 102780..103112 | + | 333 | Protein_111 | tunicamycin resistance protein | - |
| CPA47_RS26130 () | 103177..103881 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CPA47_RS26140 () | 103936..106662 | - | 2727 | Protein_113 | Multifunctional conjugation protein TraI | Relaxase |
| CPA47_RS26145 () | 106652..106825 | - | 174 | Protein_114 | type IV secretion system DNA-binding domain-containing protein | - |
| CPA47_RS26150 () | 106824..106988 | - | 165 | Protein_115 | TraU family protein | - |
| CPA47_RS26155 () | 106985..107329 | - | 345 | Protein_116 | conjugal transfer protein TraW | - |
| CPA47_RS26160 () | 107325..109646 | - | 2322 | Protein_117 | type IV secretion system protein TraC | - |
| CPA47_RS26165 () | 109806..110027 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| CPA47_RS26170 () | 110162..110677 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CPA47_RS26175 () | 110677..111036 | - | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| CPA47_RS26180 () | 110975..111562 | - | 588 | WP_071587349.1 | conjugal transfer protein TraP | - |
| CPA47_RS26185 () | 111531..112982 | - | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| CPA47_RS26190 () | 112982..113686 | - | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| CPA47_RS26195 () | 113697..114263 | - | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| CPA47_RS26200 () | 114285..114596 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CPA47_RS26205 () | 114601..114963 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CPA47_RS26210 () | 114997..115224 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CPA47_RS26215 () | 115312..115989 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| CPA47_RS26220 () | 116123..116506 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| CPA47_RS26225 () | 116837..117439 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| CPA47_RS26230 () | 117736..118557 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CPA47_RS26235 () | 118676..118963 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CPA47_RS26895 () | 118988..119194 | - | 207 | WP_024190427.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|