MGE detailed information
MGE type: Prophage MGE length: 64206 bp
Accession: NZ_CP020467 Location: 1538106..1602311 Organism: Staphylococcus aureus strain CFSAN007896 Replicon: chromosome
Accession: NZ_CP020467 Location: 1538106..1602311 Organism: Staphylococcus aureus strain CFSAN007896 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB477_RS07515 () | 1534129..1535508 | - | 1380 | WP_000902107.1 | ATP-dependent DNA helicase | - |
| AB477_RS07520 () | 1535498..1536451 | - | 954 | WP_001163814.1 | helix-turn-helix domain-containing protein | - |
| AB477_RS07525 () | 1536559..1536807 | + | 249 | WP_001151997.1 | ferredoxin | - |
| AB477_RS07530 () | 1536913..1537458 | - | 546 | WP_001186908.1 | ECF transporter S component | - |
| AB477_RS07535 () | 1537737..1537901 | - | 165 | WP_001799520.1 | hypothetical protein | - |
| AB477_RS07540 () | 1538106..1539014 | - | 909 | WP_107375222.1 | DUF1672 domain-containing protein | - |
| AB477_RS07545 () | 1539072..1539977 | - | 906 | WP_000913238.1 | DUF1672 domain-containing protein | - |
| AB477_RS14790 () | 1540067..1540282 | - | 216 | WP_170267452.1 | hypothetical protein | - |
| AB477_RS07555 () | 1540659..1541495 | - | 837 | WP_000675478.1 | hypothetical protein | - |
| AB477_RS07565 () | 1542111..1543565 | - | 1455 | WP_000909210.1 | N-acetylmuramoyl-L-alanine amidase | - |
| AB477_RS07570 () | 1543576..1543878 | - | 303 | WP_000339144.1 | phage holin | - |
| AB477_RS07575 () | 1544014..1544313 | - | 300 | WP_061734471.1 | DUF2951 family protein | - |
| AB477_RS07580 () | 1544359..1544523 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| AB477_RS07585 () | 1544516..1544905 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| AB477_RS07590 () | 1544905..1546371 | - | 1467 | WP_107375223.1 | BppU family phage baseplate upper protein | - |
| AB477_RS07595 () | 1546371..1548281 | - | 1911 | WP_000429551.1 | minor structural protein | - |
| AB477_RS07600 () | 1548297..1548587 | - | 291 | WP_000179860.1 | hypothetical protein | - |
| AB477_RS07605 () | 1548587..1550170 | - | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| AB477_RS07610 () | 1550179..1551003 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| AB477_RS07615 () | 1551003..1557203 | - | 6201 | WP_070028375.1 | phage tail tape measure protein | - |
| AB477_RS07620 () | 1557217..1557375 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| AB477_RS07625 () | 1557417..1557767 | - | 351 | WP_000589165.1 | hypothetical protein | - |
| AB477_RS07630 () | 1557825..1558280 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| AB477_RS07635 () | 1558372..1559013 | - | 642 | WP_000807536.1 | tail protein | - |
| AB477_RS07640 () | 1559048..1559443 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| AB477_RS07645 () | 1559444..1559845 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| AB477_RS07650 () | 1559842..1560174 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| AB477_RS07655 () | 1560186..1560464 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| AB477_RS07660 () | 1560533..1561696 | - | 1164 | WP_001142739.1 | phage major capsid protein | - |
| AB477_RS07665 () | 1561708..1562481 | - | 774 | WP_000061872.1 | Clp protease ClpP | - |
| AB477_RS07670 () | 1562465..1563703 | - | 1239 | WP_001100669.1 | phage portal protein | - |
| AB477_RS07675 () | 1563708..1565399 | - | 1692 | WP_000153549.1 | terminase large subunit | - |
| AB477_RS07680 () | 1565389..1565694 | - | 306 | WP_000778930.1 | P27 family phage terminase small subunit | - |
| AB477_RS07685 () | 1565821..1566135 | - | 315 | WP_000196700.1 | HNH endonuclease | - |
| AB477_RS07690 () | 1566297..1566734 | - | 438 | WP_053507569.1 | transcriptional regulator | - |
| AB477_RS07695 () | 1566747..1568114 | - | 1368 | WP_078066162.1 | DEAD/DEAH box helicase | - |
| AB477_RS07700 () | 1568095..1568385 | - | 291 | WP_000665204.1 | VRR-NUC domain-containing protein | - |
| AB477_RS07705 () | 1568519..1568623 | + | 105 | WP_015978074.1 | hypothetical protein | - |
| AB477_RS07715 () | 1568726..1571173 | - | 2448 | WP_107375224.1 | virulence-associated E family protein | - |
| AB477_RS07720 () | 1571225..1571425 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| AB477_RS07725 () | 1571493..1571645 | - | 153 | WP_000595237.1 | transcriptional activator RinB | - |
| AB477_RS07730 () | 1571638..1571874 | - | 237 | WP_000483477.1 | hypothetical protein | - |
| AB477_RS07735 () | 1571899..1572135 | - | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| AB477_RS07740 () | 1572172..1572708 | - | 537 | WP_107375225.1 | dUTPase | - |
| AB477_RS07745 () | 1572701..1572949 | - | 249 | WP_107375226.1 | DUF1024 family protein | - |
| AB477_RS07750 () | 1572964..1573206 | - | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| AB477_RS07755 () | 1573210..1573578 | - | 369 | WP_031897611.1 | phage protein | - |
| AB477_RS14795 () | 1573579..1573764 | - | 186 | WP_001187241.1 | DUF3113 family protein | - |
| AB477_RS07760 () | 1573764..1573919 | - | 156 | WP_000152769.1 | hypothetical protein | - |
| AB477_RS07765 () | 1573931..1575883 | - | 1953 | WP_107375269.1 | DNA polymerase | - |
| AB477_RS07770 () | 1575951..1576508 | - | 558 | WP_000645048.1 | DUF2815 family protein | - |
| AB477_RS07775 () | 1576534..1577700 | - | 1167 | WP_031834538.1 | DUF2800 domain-containing protein | - |
| AB477_RS07780 () | 1577697..1578059 | - | 363 | WP_000985976.1 | hypothetical protein | - |
| AB477_RS07785 () | 1578074..1578397 | - | 324 | WP_000174994.1 | hypothetical protein | - |
| AB477_RS07790 () | 1578476..1578637 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| AB477_RS07795 () | 1578650..1578913 | - | 264 | WP_001124160.1 | helix-turn-helix domain-containing protein | - |
| AB477_RS07800 () | 1578938..1579153 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| AB477_RS07805 () | 1579208..1579573 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| AB477_RS07810 () | 1579542..1579787 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| AB477_RS07815 () | 1579816..1580592 | - | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| AB477_RS07820 () | 1580606..1580842 | - | 237 | WP_001121027.1 | helix-turn-helix domain-containing protein | - |
| AB477_RS07825 () | 1580994..1581308 | + | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| AB477_RS07830 () | 1581321..1581782 | + | 462 | WP_000525004.1 | hypothetical protein | Toxin Detail |
| AB477_RS07835 () | 1581800..1582384 | + | 585 | WP_000825948.1 | hypothetical protein | - |
| AB477_RS07840 () | 1582723..1583346 | - | 624 | WP_001166482.1 | hypothetical protein | - |
| AB477_RS07845 () | 1583456..1584661 | + | 1206 | WP_000264191.1 | site-specific integrase | - |
| AB477_RS07850 () | 1584704..1586746 | - | 2043 | WP_001794062.1 | hypothetical protein | - |
| AB477_RS07855 () | 1586733..1587665 | - | 933 | WP_001574168.1 | DUF1672 domain-containing protein | - |
| AB477_RS07860 () | 1587917..1589668 | - | 1752 | WP_000987777.1 | two-component system sensor histidine kinase SrrB | - |
| AB477_RS07865 () | 1589649..1590374 | - | 726 | WP_000064078.1 | two-component system response regulator SrrA | - |
| AB477_RS07870 () | 1590507..1591244 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| AB477_RS07875 () | 1591237..1591779 | - | 543 | WP_000368652.1 | SMC-Scp complex subunit ScpB | - |
| AB477_RS07880 () | 1591772..1592503 | - | 732 | WP_000273367.1 | segregation/condensation protein A | - |
| AB477_RS07885 () | 1592595..1593101 | + | 507 | WP_001183424.1 | DUF309 domain-containing protein | - |
| AB477_RS07890 () | 1593179..1594066 | - | 888 | WP_000447733.1 | site-specific tyrosine recombinase XerD | - |
| AB477_RS07895 () | 1594115..1594564 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| AB477_RS07900 () | 1594669..1595211 | - | 543 | WP_000365236.1 | NUDIX hydrolase | - |
| AB477_RS07905 () | 1595293..1596201 | + | 909 | WP_001171333.1 | aldo/keto reductase | - |
| AB477_RS07910 () | 1596417..1596665 | - | 249 | WP_000995806.1 | hypothetical protein | - |
| AB477_RS07915 () | 1596681..1597436 | - | 756 | WP_000678227.1 | SDR family oxidoreductase | - |
| AB477_RS07920 () | 1597578..1598393 | + | 816 | WP_000779748.1 | pyrroline-5-carboxylate reductase | - |
| AB477_RS07925 () | 1598498..1599418 | - | 921 | WP_000454059.1 | ribonuclease Z | - |
| AB477_RS07930 () | 1599731..1601215 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| AB477_RS07935 () | 1601445..1602311 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
| AB477_RS07940 () | 1602394..1604043 | - | 1650 | WP_001041925.1 | alpha-glucosidase | - |
| AB477_RS07945 () | 1604059..1605078 | - | 1020 | WP_000256335.1 | LacI family DNA-binding transcriptional regulator | - |
| AB477_RS07950 () | 1605079..1605333 | - | 255 | WP_001791204.1 | hypothetical protein | - |
| AB477_RS07955 () | 1605272..1605642 | - | 371 | Protein_1498 | VOC family protein | - |
| AB477_RS14800 () | 1605886..1606047 | + | 162 | Protein_1499 | ISL3 family transposase | - |
| AB477_RS07960 () | 1606119..1607018 | - | 900 | WP_000798481.1 | carbohydrate kinase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|