MGE detailed information
MGE type: Prophage MGE length: 15142 bp
Accession: NZ_CP020342 Location: 3062064..3077205 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 3062064..3077205 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS16340 () | 3058146..3058787 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| BS647_RS16345 () | 3058843..3060021 | - | 1179 | WP_000173487.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| BS647_RS16350 () | 3060155..3060445 | + | 291 | Protein_2945 | DNA damage-inducible protein YebG | - |
| BS647_RS16355 () | 3060512..3060868 | + | 357 | WP_005047608.1 | protein YebF | - |
| BS647_RS16360 () | 3061195..3061854 | + | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| BS647_RS16370 () | 3062064..3064124 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| BS647_RS16375 () | 3064121..3064783 | - | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
| BS647_RS16380 () | 3064807..3065463 | - | 657 | Protein_2950 | carbon-nitrogen hydrolase family protein | - |
| BS647_RS16385 () | 3065565..3065795 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BS647_RS16390 () | 3065934..3066308 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BS647_RS16395 () | 3066312..3067184 | + | 873 | Protein_2953 | copper homeostasis membrane protein CopD | - |
| BS647_RS16400 () | 3067197..3067538 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3067566..3067800 | - | 235 | - | - | Antitoxin Detail |
| - | 3067696..3067799 | + | 104 | - | - | Toxin Detail |
| BS647_RS28435 () | 3067931..3069008 | - | 1078 | Protein_2955 | phage integrase Arm DNA-binding domain-containing protein | - |
| BS647_RS16415 () | 3068974..3069255 | - | 282 | WP_005127484.1 | excisionase | - |
| BS647_RS16425 () | 3070592..3071059 | + | 468 | Protein_2958 | DNA-binding transcriptional regulator PgrR | - |
| BS647_RS16430 () | 3071396..3073009 | + | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| BS647_RS16435 () | 3073060..3074091 | - | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| BS647_RS16440 () | 3074219..3074583 | + | 365 | Protein_2961 | IS3 family transposase IS911 | Transposase |
| BS647_RS16445 () | 3074767..3075954 | - | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| BS647_RS16450 () | 3075954..3076319 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| BS647_RS16455 () | 3076404..3077205 | + | 802 | Protein_2964 | IS3 family transposase IS911 | Transposase |
| BS647_RS16460 () | 3077405..3077662 | + | 258 | Protein_2965 | DUF2534 family protein | - |
| BS647_RS16465 () | 3077712..3078662 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| BS647_RS16470 () | 3078814..3079566 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| BS647_RS16475 () | 3079761..3080276 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| BS647_RS16480 () | 3080287..3080430 | - | 144 | Protein_2969 | AbgT family transporter | - |
| BS647_RS28440 () | 3080430..3080646 | + | 217 | Protein_2970 | LysR family transcriptional regulator | - |
| BS647_RS16490 () | 3080820..3081635 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120364 | NZ_CP037923 | 1317756..1337986 | 0.008 |