MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP020342 Location: 1083573..1103317 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Accession: NZ_CP020342 Location: 1083573..1103317 Organism: Shigella flexneri 1a strain 0439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS647_RS05775 (1079705) | 1079705..1080649 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| BS647_RS05780 (1080646) | 1080646..1081479 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| BS647_RS05785 (1081479) | 1081479..1082243 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| BS647_RS05790 (1082240) | 1082240..1083046 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| BS647_RS05795 (1083052) | 1083052..1083453 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| BS647_RS05800 (1083573) | 1083573..1083932 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| BS647_RS05805 (1083929) | 1083929..1084204 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| BS647_RS05810 (1084263) | 1084263..1085387 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| BS647_RS05815 (1085387) | 1085387..1088122 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| BS647_RS05820 (1088119) | 1088119..1089186 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| BS647_RS28215 (1089249) | 1089249..1089362 | - | 114 | WP_001296785.1 | protein YhiY | - |
| BS647_RS05825 (1089552) | 1089552..1091174 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| BS647_RS05830 (1091436) | 1091436..1093025 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| BS647_RS05840 (1093442) | 1093442..1094440 | + | 999 | Protein_1051 | DUF2776 domain-containing protein | - |
| BS647_RS05845 (1094527) | 1094527..1095003 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| BS647_RS05850 (1094996) | 1094996..1095760 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| BS647_RS26970 (1096006) | 1096006..1096767 | + | 762 | Protein_1054 | Transcriptional regulatory protein TdiR | VF |
| BS647_RS05860 (1096874) | 1096874..1097386 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| BS647_RS05865 (1097525) | 1097525..1098673 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| BS647_RS05870 (1098765) | 1098765..1099993 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| BS647_RS05880 (1100232) | 1100232..1101311 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| BS647_RS05885 (1101355) | 1101355..1102116 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| BS647_RS05890 (1102583) | 1102583..1103317 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| BS647_RS05895 (1103317) | 1103317..1104471 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| BS647_RS05900 (1104607) | 1104607..1104899 | + | 293 | Protein_1062 | transposase | - |
| BS647_RS05915 (1106143) | 1106143..1107342 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |