MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP020339 Location: 2903299..2923043 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Accession: NZ_CP020339 Location: 2903299..2923043 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS653_RS15970 (2899431) | 2899431..2900375 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| BS653_RS15975 (2900372) | 2900372..2901205 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| BS653_RS15980 (2901205) | 2901205..2901969 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| BS653_RS15985 (2901966) | 2901966..2902772 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| BS653_RS15990 (2902778) | 2902778..2903179 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| BS653_RS15995 (2903299) | 2903299..2903658 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| BS653_RS16000 (2903655) | 2903655..2903930 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| BS653_RS16005 (2903989) | 2903989..2905113 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| BS653_RS16010 (2905113) | 2905113..2907848 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| BS653_RS16015 (2907845) | 2907845..2908912 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| BS653_RS27615 (2908975) | 2908975..2909088 | - | 114 | WP_001296785.1 | protein YhiY | - |
| BS653_RS16020 (2909278) | 2909278..2910900 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| BS653_RS16025 (2911162) | 2911162..2912751 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| BS653_RS16035 (2913168) | 2913168..2914166 | + | 999 | Protein_2920 | DUF2776 domain-containing protein | - |
| BS653_RS16040 (2914253) | 2914253..2914729 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| BS653_RS16045 (2914722) | 2914722..2915486 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| BS653_RS26470 (2915732) | 2915732..2916493 | + | 762 | Protein_2923 | Transcriptional regulatory protein TdiR | VF |
| BS653_RS16055 (2916600) | 2916600..2917112 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| BS653_RS16060 (2917251) | 2917251..2918399 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| BS653_RS16065 (2918491) | 2918491..2919719 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| BS653_RS16075 (2919958) | 2919958..2921037 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| BS653_RS16080 (2921081) | 2921081..2921842 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| BS653_RS16085 (2922309) | 2922309..2923043 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| BS653_RS16090 (2923043) | 2923043..2924197 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| BS653_RS16095 (2924333) | 2924333..2924625 | + | 293 | Protein_2931 | transposase | - |
| BS653_RS16110 (2925869) | 2925869..2927068 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |