MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP020336 Location: 3734212..3753956 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Accession: NZ_CP020336 Location: 3734212..3753956 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS654_RS20480 (3730344) | 3730344..3731288 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| BS654_RS20485 (3731285) | 3731285..3732118 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| BS654_RS20490 (3732118) | 3732118..3732882 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| BS654_RS20495 (3732879) | 3732879..3733685 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| BS654_RS20500 (3733691) | 3733691..3734092 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| BS654_RS20505 (3734212) | 3734212..3734571 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| BS654_RS20510 (3734568) | 3734568..3734843 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| BS654_RS20515 (3734902) | 3734902..3736026 | - | 1125 | WP_094085517.1 | ABC transporter permease | - |
| BS654_RS20520 (3736026) | 3736026..3738761 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| BS654_RS20525 (3738758) | 3738758..3739825 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| BS654_RS29155 (3739888) | 3739888..3740001 | - | 114 | WP_001296785.1 | protein YhiY | - |
| BS654_RS20530 (3740191) | 3740191..3741813 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| BS654_RS20535 (3742075) | 3742075..3743664 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| BS654_RS20545 (3744081) | 3744081..3745079 | + | 999 | Protein_3743 | DUF2776 domain-containing protein | - |
| BS654_RS20550 (3745166) | 3745166..3745642 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| BS654_RS20555 (3745635) | 3745635..3746399 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| BS654_RS27930 (3746645) | 3746645..3747406 | + | 762 | Protein_3746 | Transcriptional regulatory protein TdiR | VF |
| BS654_RS20565 (3747513) | 3747513..3748025 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| BS654_RS20570 (3748164) | 3748164..3749312 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| BS654_RS20575 (3749404) | 3749404..3750632 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| BS654_RS20585 (3750871) | 3750871..3751950 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| BS654_RS20590 (3751994) | 3751994..3752755 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| BS654_RS20595 (3753222) | 3753222..3753956 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| BS654_RS20600 (3753956) | 3753956..3755110 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| BS654_RS20605 (3755246) | 3755246..3755538 | + | 293 | Protein_3754 | transposase | - |
| BS654_RS20620 (3756782) | 3756782..3757981 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |