MGE detailed information
MGE type: Prophage MGE length: 18707 bp
Accession: NZ_CP020336 Location: 2034691..2053397 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Accession: NZ_CP020336 Location: 2034691..2053397 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS654_RS11240 () | 2030261..2031076 | + | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
| BS654_RS28975 () | 2031250..2031466 | - | 217 | Protein_2066 | LysR family transcriptional regulator | - |
| BS654_RS11250 () | 2031466..2031609 | + | 144 | Protein_2067 | AbgT family transporter | - |
| BS654_RS11255 () | 2031620..2032135 | + | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| BS654_RS11260 () | 2032330..2033082 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| BS654_RS11265 () | 2033234..2034184 | + | 951 | WP_001262123.1 | universal stress protein UspE | - |
| BS654_RS11270 () | 2034234..2034491 | - | 258 | Protein_2071 | DUF2534 family protein | - |
| BS654_RS11275 () | 2034691..2035168 | - | 478 | Protein_2072 | DDE-type integrase/transposase/recombinase | - |
| BS654_RS11280 () | 2035249..2036757 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| BS654_RS11295 () | 2037430..2037756 | - | 327 | Protein_2074 | IS3 family transposase IS911 | Transposase |
| BS654_RS11300 () | 2037847..2038212 | + | 366 | WP_000124119.1 | hypothetical protein | - |
| BS654_RS11305 () | 2038212..2039399 | + | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| BS654_RS11310 () | 2039583..2039947 | - | 365 | Protein_2077 | IS3 family transposase IS911 | Transposase |
| BS654_RS11315 () | 2040075..2041106 | + | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| BS654_RS11320 () | 2041157..2042770 | - | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| BS654_RS11325 () | 2043107..2043574 | - | 468 | Protein_2080 | DNA-binding transcriptional regulator PgrR | - |
| BS654_RS11330 () | 2043638..2043948 | + | 311 | Protein_2081 | IS3 family transposase ISSfl10 | Transposase |
| BS654_RS11335 () | 2043991..2045186 | - | 1196 | Protein_2082 | IS3 family transposase | - |
| BS654_RS11340 () | 2045241..2046089 | + | 849 | Protein_2083 | IS3 family transposase ISSd1 | Transposase |
| BS654_RS11345 () | 2046206..2046487 | + | 282 | WP_005127484.1 | excisionase | - |
| BS654_RS28980 () | 2046453..2047530 | + | 1078 | Protein_2085 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2047661..2047895 | + | 235 | - | - | Antitoxin Detail |
| - | 2047662..2047765 | - | 104 | - | - | Toxin Detail |
| BS654_RS11360 () | 2047923..2048264 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BS654_RS11365 () | 2048277..2049149 | - | 873 | Protein_2087 | copper homeostasis membrane protein CopD | - |
| BS654_RS11370 () | 2049153..2049527 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BS654_RS11375 () | 2049666..2049896 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BS654_RS11380 () | 2049998..2050654 | + | 657 | Protein_2090 | carbon-nitrogen hydrolase family protein | - |
| BS654_RS11385 () | 2050678..2051340 | + | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
| BS654_RS11390 () | 2051337..2053397 | - | 2061 | WP_000936980.1 | oligopeptidase B | - |
| BS654_RS11400 () | 2053607..2054266 | - | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| BS654_RS11405 () | 2054593..2054949 | - | 357 | WP_005047608.1 | protein YebF | - |
| BS654_RS11410 () | 2055016..2055306 | - | 291 | Protein_2095 | DNA damage-inducible protein YebG | - |
| BS654_RS11415 () | 2055440..2056618 | + | 1179 | WP_000173487.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| BS654_RS11420 () | 2056674..2057315 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120364 | NZ_CP037923 | 1317756..1337986 | 0.009 |