MGE detailed information
MGE type: Prophage MGE length: 14004 bp
Accession: NZ_CP020336 Location: 1725543..1739546 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Accession: NZ_CP020336 Location: 1725543..1739546 Organism: Shigella flexneri 4c strain 1602 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS654_RS09540 (1721386) | 1721386..1722150 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| BS654_RS09550 (1722469) | 1722469..1722948 | + | 480 | Protein_1753 | cupin domain-containing protein | - |
| BS654_RS09555 (1723003) | 1723003..1723700 | + | 698 | WP_242445273.1 | IS1 family transposase | - |
| BS654_RS09560 (1723694) | 1723694..1723861 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| BS654_RS09565 (1724263) | 1724263..1725024 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| BS654_RS09570 (1725092) | 1725092..1725295 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| BS654_RS09575 (1725543) | 1725543..1727822 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| BS654_RS09580 (1728156) | 1728156..1728905 | - | 750 | Protein_1759 | Type 1 fimbrin D-mannose specific adhesin | VF |
| BS654_RS09585 (1728961) | 1728961..1729658 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| BS654_RS09590 (1729676) | 1729676..1730554 | + | 879 | Protein_1761 | IS3 family transposase IS600 | Transposase |
| BS654_RS09595 (1730579) | 1730579..1730758 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| BS654_RS28390 (1730908) | 1730908..1731069 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| BS654_RS09605 (1731069) | 1731069..1731254 | - | 186 | Protein_1764 | DUF1737 domain-containing protein | - |
| BS654_RS09610 (1731514) | 1731514..1731849 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| BS654_RS27615 (1732130) | 1732130..1732238 | - | 109 | Protein_1766 | DUF3927 family protein | - |
| BS654_RS09635 (1733159) | 1733159..1733980 | - | 822 | WP_000762882.1 | antitermination protein | - |
| BS654_RS09640 (1733995) | 1733995..1734351 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BS654_RS09645 (1734364) | 1734364..1735413 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| BS654_RS09650 (1735415) | 1735415..1735693 | - | 279 | Protein_1770 | hypothetical protein | - |
| BS654_RS09655 (1735760) | 1735760..1736011 | - | 252 | WP_000980987.1 | protein Rem | - |
| BS654_RS09660 (1736229) | 1736229..1736384 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| BS654_RS09665 (1736456) | 1736456..1736743 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| BS654_RS09670 (1736743) | 1736743..1736982 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| BS654_RS09675 (1737007) | 1737007..1737312 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| BS654_RS09680 (1737309) | 1737309..1738465 | - | 1157 | Protein_1776 | IS3 family transposase IS600 | Transposase |
| BS654_RS09685 (1738527) | 1738527..1739546 | + | 1020 | Protein_1777 | MHS family MFS transporter YdfJ | - |
| BS654_RS09690 (1739635) | 1739635..1741095 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| BS654_RS09695 (1741131) | 1741131..1741334 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| BS654_RS09700 (1741512) | 1741512..1742198 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| BS654_RS09705 (1742287) | 1742287..1743033 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |