MGE detailed information
MGE type: Genomic_island MGE length: 21019 bp
Accession: NZ_CP020086 Location: 803674..824692 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Accession: NZ_CP020086 Location: 803674..824692 Organism: Shigella flexneri 1a strain 0670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS04070 (798786) | 798786..799121 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| B4376_RS04075 (799192) | 799192..800691 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| B4376_RS04080 (800923) | 800923..802122 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| B4376_RS04090 (802651) | 802651..803348 | + | 698 | WP_242445271.1 | IS1 family transposase | - |
| B4376_RS04095 (803366) | 803366..803658 | - | 293 | Protein_725 | transposase | - |
| B4376_RS04100 (803674) | 803674..804948 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| B4376_RS04105 (804948) | 804948..805682 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| B4376_RS04110 (806149) | 806149..806910 | + | 762 | WP_005090407.1 | Regulatory protein SoxS | VF |
| B4376_RS04115 (806954) | 806954..808033 | + | 1080 | WP_005052551.1 | DNA topoisomerase 3 | VF |
| B4376_RS04130 (809592) | 809592..810740 | + | 1149 | WP_005052604.1 | hypothetical protein | VF |
| B4376_RS04135 (810879) | 810879..811391 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| B4376_RS27030 (811498) | 811498..812259 | - | 762 | Protein_733 | tRNA-specific 2-thiouridylase MnmA | VF |
| B4376_RS04145 (812505) | 812505..813269 | + | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| B4376_RS04150 (813262) | 813262..813738 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| B4376_RS04155 (813825) | 813825..814823 | - | 999 | Protein_736 | DUF2776 domain-containing protein | - |
| B4376_RS04165 (815240) | 815240..816829 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| B4376_RS04170 (817091) | 817091..818713 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| B4376_RS28200 (818903) | 818903..819016 | + | 114 | WP_001296785.1 | protein YhiY | - |
| B4376_RS04175 (819079) | 819079..820146 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| B4376_RS04180 (820143) | 820143..822878 | + | 2736 | WP_000149170.1 | putative ABC transporter ATP-binding protein YbiT | VF |
| B4376_RS04185 (822878) | 822878..824002 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| B4376_RS04190 (824061) | 824061..824336 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| B4376_RS04195 (824333) | 824333..824692 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| B4376_RS04200 (824812) | 824812..825213 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| B4376_RS04205 (825219) | 825219..826025 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| B4376_RS04210 (826022) | 826022..826786 | - | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| B4376_RS04215 (826786) | 826786..827619 | - | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| B4376_RS04220 (827616) | 827616..828560 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |