MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82965 bp
Accession: NZ_CP019874 Location: 1..82965 Organism: Pseudomonas syringae pv. tomato strain B13-200 Replicon: plasmid pB13-200C
Accession: NZ_CP019874 Location: 1..82965 Organism: Pseudomonas syringae pv. tomato strain B13-200 Replicon: plasmid pB13-200C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XJ28_RS31305 () | 26..262 | - | 237 | WP_007247241.1 | hypothetical protein | - |
| XJ28_RS31310 () | 286..3342 | - | 3057 | WP_007247242.1 | hypothetical protein | - |
| XJ28_RS31315 () | 3317..3928 | - | 612 | WP_032649087.1 | hypothetical protein | - |
| XJ28_RS31320 () | 4009..4404 | - | 396 | WP_007247244.1 | hypothetical protein | - |
| XJ28_RS31325 () | 4531..5634 | - | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| XJ28_RS31330 () | 5649..6203 | - | 555 | WP_105224217.1 | conjugal transfer protein TraQ | - |
| XJ28_RS31335 () | 6212..6922 | - | 711 | WP_007247245.1 | conjugal transfer protein TraP | - |
| XJ28_RS31340 () | 6919..8277 | - | 1359 | WP_007247246.1 | conjugal transfer protein TraO | - |
| XJ28_RS31345 () | 8283..9341 | - | 1059 | WP_080554600.1 | hypothetical protein | VF |
| XJ28_RS31350 () | 9398..10102 | - | 705 | WP_010214730.1 | DotI/IcmL/TraM family protein | - |
| XJ28_RS31355 () | 10099..10452 | - | 354 | WP_010214729.1 | hypothetical protein | - |
| XJ28_RS31360 () | 10478..14767 | - | 4290 | WP_168199516.1 | DNA primase | - |
| XJ28_RS32720 () | 14971..15159 | - | 189 | WP_069707236.1 | hypothetical protein | - |
| XJ28_RS31365 () | 15272..15553 | - | 282 | WP_010208375.1 | IcmT/TraK family protein | - |
| XJ28_RS31370 () | 15582..15827 | - | 246 | WP_010208376.1 | hypothetical protein | - |
| XJ28_RS31375 () | 15864..16361 | - | 498 | WP_010208377.1 | Phospholipase D | VF |
| XJ28_RS31380 () | 16441..16689 | - | 249 | WP_053486299.1 | hypothetical protein | - |
| XJ28_RS31385 () | 16727..16960 | - | 234 | WP_010209171.1 | hypothetical protein | - |
| XJ28_RS31390 () | 17092..18273 | - | 1182 | WP_060404092.1 | Twitching mobility protein | VF |
| XJ28_RS31395 () | 18270..19070 | - | 801 | WP_007247253.1 | hypothetical protein | VF |
| XJ28_RS31400 () | 19067..19540 | - | 474 | WP_005759124.1 | DotD/TraH family lipoprotein | - |
| XJ28_RS31405 () | 19577..20068 | - | 492 | WP_010209157.1 | hypothetical protein | VF |
| XJ28_RS31415 () | 20361..20570 | - | 210 | WP_003344343.1 | hypothetical protein | - |
| XJ28_RS31420 () | 20659..21192 | - | 534 | WP_005769797.1 | transcriptional regulator | - |
| XJ28_RS31425 () | 21436..21792 | + | 357 | WP_007247489.1 | helix-turn-helix domain-containing protein | - |
| XJ28_RS32725 () | 21811..21987 | - | 177 | WP_010209149.1 | hypothetical protein | - |
| XJ28_RS31430 () | 22198..23529 | - | 1332 | WP_031598409.1 | MFS transporter | - |
| XJ28_RS31435 () | 23820..24701 | + | 882 | WP_010204121.1 | HTH-type transcriptional regulator GltC | VF |
| XJ28_RS31445 () | 25208..25735 | - | 528 | WP_010204128.1 | DUF2778 domain-containing protein | - |
| XJ28_RS31450 () | 25760..26260 | - | 501 | WP_007247495.1 | Protein hcp1 | VF |
| XJ28_RS31455 () | 26394..27077 | + | 684 | WP_032640233.1 | hypothetical protein | - |
| XJ28_RS31460 () | 27102..29057 | - | 1956 | WP_007247497.1 | Protein TraI | Relaxase |
| XJ28_RS31465 () | 29068..29397 | - | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| XJ28_RS31475 () | 29842..30120 | + | 279 | WP_054090703.1 | hypothetical protein | - |
| XJ28_RS31480 () | 30194..30382 | - | 189 | WP_010210213.1 | hypothetical protein | - |
| XJ28_RS31485 () | 30440..31276 | - | 837 | WP_010210211.1 | DUF945 domain-containing protein | - |
| XJ28_RS31490 () | 31323..31700 | - | 378 | WP_007247501.1 | hypothetical protein | - |
| XJ28_RS31500 () | 32160..32576 | - | 417 | WP_054090701.1 | hypothetical protein | - |
| XJ28_RS31505 () | 32638..32915 | - | 278 | Protein_38 | XRE family transcriptional regulator | - |
| XJ28_RS31510 () | 32989..34011 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31515 () | 34008..34817 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31520 () | 34981..35544 | + | 564 | WP_010204552.1 | hypothetical protein | - |
| XJ28_RS31525 () | 35959..36579 | + | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XJ28_RS31535 () | 36912..37133 | - | 222 | WP_007247505.1 | hypothetical protein | - |
| XJ28_RS31540 () | 37171..37371 | - | 201 | WP_002556050.1 | molecular chaperone DnaK | - |
| XJ28_RS31545 () | 37766..38449 | + | 684 | WP_002556051.1 | AAA family ATPase | - |
| XJ28_RS31550 () | 38449..38730 | + | 282 | WP_004666803.1 | hypothetical protein | - |
| XJ28_RS31555 () | 38878..39900 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31560 () | 39897..40706 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| XJ28_RS31565 () | 41050..41331 | + | 282 | WP_032649429.1 | hypothetical protein | - |
| XJ28_RS31570 () | 41312..42541 | + | 1230 | WP_105224218.1 | IS91 family transposase IS801 | Transposase |
| XJ28_RS31580 () | 42722..43129 | + | 408 | Protein_51 | type III effector | - |
| XJ28_RS31590 () | 43510..44039 | - | 530 | Protein_52 | IS3 family transposase IS1240 | Transposase |
| XJ28_RS31595 () | 44091..44462 | + | 372 | Protein_53 | hypothetical protein | - |
| XJ28_RS31600 () | 44465..45379 | + | 915 | WP_007247609.1 | DUF4868 domain-containing protein | - |
| XJ28_RS31605 () | 45440..46369 | - | 930 | WP_007247608.1 | DUF4928 family protein | - |
| XJ28_RS31610 () | 46369..47517 | - | 1149 | WP_005734775.1 | DNA cytosine methyltransferase | - |
| XJ28_RS31620 () | 47932..48294 | + | 363 | WP_007247606.1 | hypothetical protein | - |
| XJ28_RS31625 () | 48297..48524 | + | 228 | WP_007247605.1 | hypothetical protein | - |
| XJ28_RS31630 () | 48600..49232 | - | 633 | WP_054089639.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XJ28_RS31640 () | 49450..49956 | + | 507 | Protein_60 | IS3 family transposase IS51 | Transposase |
| XJ28_RS31645 () | 50206..51429 | + | 1224 | WP_032649315.1 | type III secretion system effector HopQ1-1 | - |
| XJ28_RS31650 () | 51545..53662 | - | 2118 | WP_007247623.1 | type III secretion system effector HopD1 | - |
| XJ28_RS31660 () | 54160..54396 | - | 237 | WP_007247577.1 | carbon storage regulator | - |
| XJ28_RS31665 () | 54602..55180 | - | 579 | WP_005746172.1 | AAA family ATPase | - |
| XJ28_RS31670 () | 55180..55836 | - | 657 | WP_007247578.1 | hypothetical protein | - |
| XJ28_RS31675 () | 55873..57075 | - | 1203 | WP_005734276.1 | aspartate aminotransferase family protein | - |
| XJ28_RS31680 () | 57116..58150 | - | 1035 | WP_010212085.1 | sulfotransferase | - |
| XJ28_RS31685 () | 58168..59088 | - | 921 | WP_007247581.1 | TauD/TfdA family dioxygenase | - |
| XJ28_RS31690 () | 59234..59881 | - | 648 | WP_007247582.1 | histidine phosphatase family protein | - |
| XJ28_RS31695 () | 60223..61158 | - | 936 | WP_007247583.1 | type III effector avrD1 | - |
| XJ28_RS31700 () | 61433..62065 | - | 633 | WP_054091164.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XJ28_RS31705 () | 62106..62525 | - | 420 | WP_007247669.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| XJ28_RS31710 () | 62522..62779 | - | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| XJ28_RS31720 () | 63494..65049 | + | 1556 | WP_086003402.1 | IS3 family transposase IS1240 | Transposase |
| XJ28_RS31730 () | 66066..66764 | - | 699 | WP_007247667.1 | GNAT family N-acetyltransferase | - |
| XJ28_RS31735 () | 67005..67292 | - | 288 | WP_010209640.1 | HU family DNA-binding protein | - |
| XJ28_RS31740 () | 67503..67784 | + | 282 | WP_032649429.1 | hypothetical protein | - |
| XJ28_RS31745 () | 67765..68994 | + | 1230 | WP_105224218.1 | IS91 family transposase IS801 | Transposase |
| XJ28_RS31755 () | 69296..70609 | - | 1314 | WP_007247229.1 | replication initiation protein | - |
| XJ28_RS32735 () | 71008..71235 | - | 228 | WP_010214081.1 | hypothetical protein | - |
| XJ28_RS31765 () | 71314..71742 | - | 429 | WP_002556024.1 | GntR family transcriptional regulator | - |
| XJ28_RS31770 () | 71930..72493 | - | 564 | WP_010214078.1 | hypothetical protein | - |
| XJ28_RS31775 () | 72514..72936 | - | 423 | WP_007247232.1 | hypothetical protein | - |
| XJ28_RS31780 () | 72964..75252 | - | 2289 | WP_105224219.1 | type IV secretory system conjugative DNA transfer family protein | - |
| XJ28_RS31785 () | 75239..76324 | - | 1086 | WP_060404100.1 | thioredoxin fold domain-containing protein | - |
| XJ28_RS31790 () | 76417..76617 | + | 201 | WP_004644067.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| XJ28_RS31795 () | 76614..76991 | + | 378 | WP_003344395.1 | PIN domain-containing protein | Toxin Detail |
| XJ28_RS31800 () | 76981..78183 | - | 1203 | WP_105224220.1 | conjugal transfer protein | - |
| XJ28_RS31805 () | 78276..78923 | - | 648 | WP_007247237.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| XJ28_RS31810 () | 78972..81113 | - | 2142 | WP_007247238.1 | DotA/TraY family protein | - |
| XJ28_RS31815 () | 81142..81744 | - | 603 | WP_007247239.1 | conjugal transfer protein TraX | - |
| XJ28_RS31820 () | 81734..82948 | - | 1215 | WP_010214736.1 | conjugal transfer protein TraW | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|