MGE detailed information
MGE type: Mobilizable plasmid MGE length: 82364 bp
Accession: NZ_CP018969 Location: 1..82364 Organism: Escherichia coli strain Ecol_542 Replicon: plasmid pEC542_1
Accession: NZ_CP018969 Location: 1..82364 Organism: Escherichia coli strain Ecol_542 Replicon: plasmid pEC542_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE966_RS00350 () | 1..258 | - | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| BE966_RS00355 () | 285..2135 | - | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| BE966_RS00360 () | 2132..2770 | - | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| BE966_RS00365 () | 2779..3084 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| BE966_RS00370 () | 3114..4106 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| BE966_RS00375 () | 4103..4735 | - | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| BE966_RS00380 () | 4732..5118 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| BE966_RS00385 () | 5115..7742 | - | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| BE966_RS00390 () | 7902..8123 | - | 222 | WP_078207266.1 | conjugal transfer protein TraR | - |
| BE966_RS00395 () | 8258..8773 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| BE966_RS00400 () | 8773..9132 | - | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| BE966_RS00405 () | 9071..9658 | - | 588 | WP_013023871.1 | conjugal transfer protein TraP | - |
| BE966_RS00410 () | 9627..11078 | - | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| BE966_RS00415 () | 11078..11782 | - | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| BE966_RS00420 () | 11793..12134 | - | 342 | Protein_15 | type IV conjugative transfer system protein TraE | - |
| BE966_RS00425 () | 12221..12646 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| BE966_RS00430 () | 12643..12993 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| BE966_RS00435 () | 13024..14637 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| BE966_RS00440 () | 14669..14899 | - | 231 | Protein_19 | type IV conjugative transfer system protein TraE | - |
| BE966_RS00445 () | 14921..15232 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| BE966_RS00450 () | 15237..15599 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| BE966_RS00455 () | 15633..15860 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| BE966_RS00460 () | 15948..16625 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| BE966_RS00465 () | 16759..17142 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| BE966_RS00470 () | 17473..18075 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| BE966_RS00475 () | 18372..19193 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| BE966_RS00480 () | 19312..19599 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| BE966_RS29055 () | 19624..19830 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| BE966_RS29060 () | 19743..20078 | - | 336 | WP_013023876.1 | hypothetical protein | - |
| BE966_RS00505 () | 20521..20679 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 20723..20763 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20723..20763 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20723..20763 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20723..20763 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 22207..22393 | - | 187 | NuclAT_0 | - | - |
| - () | 22207..22393 | - | 187 | NuclAT_0 | - | - |
| - () | 22207..22393 | - | 187 | NuclAT_0 | - | - |
| - () | 22207..22393 | - | 187 | NuclAT_0 | - | - |
| BE966_RS00520 () | 22405..23124 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| BE966_RS00525 () | 23121..23555 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| BE966_RS00530 () | 23610..25568 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| BE966_RS00535 () | 25634..25867 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| BE966_RS00540 () | 25930..26469 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| BE966_RS29065 () | 26614..26949 | - | 336 | WP_013023883.1 | hypothetical protein | - |
| BE966_RS00560 () | 27112..27354 | - | 243 | WP_001617878.1 | hypothetical protein | - |
| BE966_RS00565 () | 27380..27943 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| BE966_RS00570 () | 27991..29352 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| BE966_RS00575 () | 29404..29634 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| BE966_RS00590 () | 30669..30860 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| BE966_RS00595 () | 30857..31279 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| BE966_RS00600 () | 31326..31628 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| BE966_RS28595 () | 32168..32944 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| BE966_RS00615 () | 32995..33429 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| BE966_RS00620 () | 33443..33664 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| BE966_RS00625 () | 33665..34348 | - | 684 | WP_000086185.1 | DNA methylase | - |
| BE966_RS00630 () | 34425..34729 | - | 305 | Protein_49 | hypothetical protein | - |
| BE966_RS00635 () | 34733..35635 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| BE966_RS00650 () | 36502..37473 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| BE966_RS00655 () | 37473..38639 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| BE966_RS00660 () | 39227..39982 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| BE966_RS00665 () | 40756..41562 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| BE966_RS00670 () | 41563..41868 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| BE966_RS00675 () | 41870..42088 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| BE966_RS00680 () | 42796..43791 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| BE966_RS00685 () | 43795..44727 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| BE966_RS00690 () | 44864..45561 | - | 698 | Protein_59 | IS1 family transposase IS1R | Transposase |
| BE966_RS00700 () | 45775..48891 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| BE966_RS00705 () | 49013..50296 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| BE966_RS00710 () | 50293..51849 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| BE966_RS00715 () | 52032..52253 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| BE966_RS00720 () | 52253..52633 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| BE966_RS00725 () | 52638..52817 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| BE966_RS00730 () | 52845..53204 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| BE966_RS00735 () | 53128..53541 | + | 414 | Protein_67 | IS3 family transposase ISLad1 | Transposase |
| BE966_RS00740 () | 53491..53808 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| BE966_RS00745 () | 54036..55016 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| BE966_RS00750 () | 55260..56663 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| BE966_RS00755 () | 56650..57582 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| BE966_RS00760 () | 57691..58020 | - | 330 | Protein_72 | TOBE domain-containing protein | - |
| BE966_RS00765 () | 58036..58733 | - | 698 | Protein_73 | IS1 family transposase IS1R | Transposase |
| BE966_RS00775 () | 58791..59039 | + | 249 | Protein_74 | abortive infection family protein | - |
| BE966_RS00780 () | 59408..60139 | - | 732 | WP_001617898.1 | hypothetical protein | - |
| BE966_RS00790 () | 60925..61902 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| BE966_RS00795 () | 62187..62927 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| BE966_RS00800 () | 63048..63236 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| BE966_RS00805 () | 63603..64772 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| BE966_RS28600 () | 64998..65173 | - | 176 | Protein_80 | IS3 family transposase | - |
| BE966_RS00810 () | 65619..65891 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| BE966_RS00815 () | 66416..66852 | - | 437 | Protein_82 | IS3 family transposase IS2 | Transposase |
| BE966_RS00825 () | 67134..68414 | + | 1281 | Protein_83 | Hemin receptor | VF |
| BE966_RS00830 () | 68479..69183 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| BE966_RS00835 () | 69358..69915 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| BE966_RS00840 () | 70079..70468 | + | 390 | Protein_86 | Tn3 family transposase TnpA_Tn3 | Transposase |
| BE966_RS00845 () | 70536..71633 | - | 1098 | Protein_87 | TonB-dependent receptor | - |
| BE966_RS00850 () | 71690..72658 | - | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| BE966_RS00855 () | 72693..73568 | - | 876 | WP_032277257.1 | Beta-lactamase CTX-M-97 | ARG |
| BE966_RS00860 () | 73818..73997 | - | 180 | Protein_90 | IS1380 family transposase | - |
| BE966_RS00865 () | 74062..74766 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| BE966_RS00875 () | 74832..75377 | + | 546 | Protein_92 | Tn3 family transposase TnpA_Tn3 | Transposase |
| BE966_RS00880 () | 75413..75828 | - | 416 | Protein_93 | IS1 family transposase IS1R | Transposase |
| BE966_RS00890 () | 76077..76478 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| BE966_RS28605 () | 76411..76668 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| BE966_RS00895 () | 76761..77414 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| BE966_RS00905 () | 78354..79211 | - | 858 | WP_001617855.1 | incFII family plasmid replication initiator RepA | - |
| BE966_RS00910 () | 79204..79278 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| BE966_RS29070 () | 79275..79409 | - | 135 | Protein_99 | protein CopA/IncA | - |
| BE966_RS00920 () | 79515..79649 | - | 135 | Protein_100 | replication protein A | - |
| BE966_RS00925 () | 79667..80364 | - | 698 | Protein_101 | IS1 family transposase | - |
| BE966_RS00930 () | 80519..81499 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|