MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 92707 bp
Accession: NZ_CP018860 Location: 1..92707 Organism: Xanthomonas citri pv. citri strain LH201 Replicon: plasmid pLH201.2
Accession: NZ_CP018860 Location: 1..92707 Organism: Xanthomonas citri pv. citri strain LH201 Replicon: plasmid pLH201.2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD09_RS24420 () | 1..2976 | + | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| BJD09_RS26010 () | 2995..3177 | + | 183 | Protein_1 | UPF0149 family protein | - |
| BJD09_RS24435 () | 3251..4465 | + | 1215 | WP_011050083.1 | IS4 family transposase ISXac1 | Transposase |
| BJD09_RS24440 () | 4484..5053 | + | 570 | Protein_3 | UPF0149 family protein | - |
| BJD09_RS24445 () | 5098..5304 | + | 207 | Protein_4 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| BJD09_RS24450 () | 5471..5775 | - | 305 | Protein_5 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| BJD09_RS24455 () | 5759..6361 | - | 603 | WP_011052950.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| BJD09_RS24460 () | 6567..6824 | + | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| BJD09_RS24465 () | 6824..7156 | + | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| BJD09_RS26015 () | 7179..7430 | + | 252 | WP_125459571.1 | hypothetical protein | - |
| BJD09_RS24470 () | 7427..7639 | + | 213 | WP_011052947.1 | hypothetical protein | - |
| BJD09_RS24475 () | 7629..8165 | + | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| BJD09_RS26260 () | 8455..8676 | + | 222 | WP_011052944.1 | hypothetical protein | - |
| BJD09_RS24495 () | 8922..12809 | + | 3888 | WP_075150221.1 | TAL effector repeat-containing protein | - |
| BJD09_RS24500 () | 12908..13054 | - | 147 | Protein_14 | transposase | - |
| BJD09_RS24505 () | 13099..13797 | - | 699 | WP_058958626.1 | UPF0149 family protein | - |
| BJD09_RS24510 () | 13816..16791 | - | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| BJD09_RS24515 () | 16796..17215 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| BJD09_RS24520 () | 17215..17454 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| BJD09_RS24525 () | 17668..18591 | + | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| BJD09_RS24530 () | 18635..18817 | + | 183 | Protein_20 | helix-turn-helix domain-containing protein | - |
| BJD09_RS24535 () | 18948..19364 | - | 417 | WP_087962480.1 | transposase | - |
| BJD09_RS26020 () | 19418..19624 | - | 207 | WP_011052961.1 | hypothetical protein | - |
| BJD09_RS24540 () | 19674..20003 | - | 330 | WP_005918642.1 | hypothetical protein | - |
| BJD09_RS24545 () | 20150..20749 | + | 600 | WP_015462601.1 | hypothetical protein | - |
| BJD09_RS24550 () | 21076..21525 | + | 450 | WP_015462602.1 | hypothetical protein | - |
| BJD09_RS24555 () | 21522..22127 | + | 606 | WP_011052963.1 | M48 family metalloprotease | - |
| BJD09_RS24560 () | 22124..22666 | + | 543 | WP_011052965.1 | hypothetical protein | - |
| BJD09_RS24565 () | 22746..23090 | - | 345 | WP_075150220.1 | hypothetical protein | - |
| BJD09_RS24570 () | 23084..24409 | - | 1326 | WP_075153505.1 | lytic murein transglycosylase | - |
| BJD09_RS24575 () | 24542..27531 | - | 2990 | Protein_30 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| BJD09_RS24580 () | 27539..28813 | - | 1275 | WP_011052968.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| BJD09_RS24585 () | 29005..30060 | + | 1056 | WP_011052969.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| BJD09_RS24590 () | 30193..31269 | + | 1077 | WP_040107542.1 | hypothetical protein | - |
| BJD09_RS24600 () | 32628..35918 | + | 3291 | WP_075150219.1 | TAL effector repeat-containing protein | - |
| BJD09_RS24605 () | 36284..37504 | - | 1221 | WP_011052942.1 | replication initiation protein | - |
| BJD09_RS24610 () | 37752..38066 | - | 315 | WP_005918227.1 | hypothetical protein | - |
| BJD09_RS24615 () | 38211..38534 | - | 324 | WP_005918229.1 | hypothetical protein | - |
| BJD09_RS24620 () | 38531..39157 | - | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| BJD09_RS24625 () | 39613..39921 | + | 309 | WP_015462607.1 | hypothetical protein | - |
| BJD09_RS24630 () | 39918..40127 | + | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| BJD09_RS24635 () | 40522..40875 | - | 354 | WP_039700904.1 | hypothetical protein | - |
| BJD09_RS24640 () | 40924..41633 | - | 710 | Protein_42 | plasmid stabilization protein | - |
| BJD09_RS24645 () | 41630..42076 | - | 447 | WP_011052937.1 | hypothetical protein | - |
| BJD09_RS24650 () | 42424..42819 | + | 396 | WP_011052973.1 | hypothetical protein | - |
| BJD09_RS26265 () | 42819..42992 | + | 174 | WP_011052974.1 | hypothetical protein | - |
| BJD09_RS24655 () | 43134..43406 | - | 273 | WP_005934628.1 | hypothetical protein | - |
| BJD09_RS24660 () | 43519..43764 | + | 246 | Protein_47 | IS3 family transposase | - |
| BJD09_RS24665 () | 43823..44200 | + | 378 | WP_004666662.1 | hypothetical protein | - |
| BJD09_RS24670 () | 44361..44756 | - | 396 | WP_015463818.1 | type II toxin-antitoxin system VapC family toxin | - |
| BJD09_RS24675 () | 44753..45004 | - | 252 | WP_003108276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| BJD09_RS24680 () | 45184..45813 | + | 630 | WP_011052932.1 | Tn3 family transposase ISPsy42 | Transposase |
| BJD09_RS26270 () | 46915..47079 | - | 165 | WP_155400514.1 | hypothetical protein | - |
| BJD09_RS24705 () | 47719..48540 | + | 822 | WP_011052929.1 | hypothetical protein | - |
| BJD09_RS24710 () | 49175..49912 | + | 738 | WP_011052960.1 | DNA-binding protein | - |
| BJD09_RS24715 () | 49995..50624 | + | 630 | WP_015463817.1 | AAA family ATPase | - |
| BJD09_RS24720 () | 50621..50857 | + | 237 | WP_015463816.1 | hypothetical protein | - |
| BJD09_RS24730 () | 52110..55601 | + | 3492 | WP_075153506.1 | TAL effector repeat-containing protein | - |
| BJD09_RS24735 () | 55967..57187 | - | 1221 | WP_011052942.1 | replication initiation protein | - |
| BJD09_RS24740 () | 57435..57749 | - | 315 | WP_005918227.1 | hypothetical protein | - |
| BJD09_RS24745 () | 57894..58217 | - | 324 | WP_005918229.1 | hypothetical protein | - |
| BJD09_RS24750 () | 58214..58840 | - | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| BJD09_RS24755 () | 59296..59604 | + | 309 | WP_015462607.1 | hypothetical protein | - |
| BJD09_RS24760 () | 59601..59810 | + | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| BJD09_RS24765 () | 60205..60558 | - | 354 | WP_039700904.1 | hypothetical protein | - |
| BJD09_RS24770 () | 60607..61316 | - | 710 | Protein_66 | plasmid stabilization protein | - |
| BJD09_RS24775 () | 61313..61759 | - | 447 | WP_011052937.1 | hypothetical protein | - |
| BJD09_RS24780 () | 62107..62502 | + | 396 | WP_011052973.1 | hypothetical protein | - |
| BJD09_RS26275 () | 62502..62675 | + | 174 | WP_011052974.1 | hypothetical protein | - |
| BJD09_RS24785 () | 62817..63089 | - | 273 | WP_005934628.1 | hypothetical protein | - |
| BJD09_RS24790 () | 63380..63730 | + | 351 | WP_015462612.1 | hypothetical protein | - |
| BJD09_RS26340 () | 63929..64270 | + | 342 | WP_031425612.1 | hypothetical protein | - |
| BJD09_RS24800 () | 64529..66103 | + | 1575 | WP_011052977.1 | type IV secretion system DNA-binding domain-containing protein | - |
| BJD09_RS24805 () | 66117..69092 | + | 2976 | WP_011052978.1 | Multifunctional conjugation protein TraI | Relaxase |
| BJD09_RS24810 () | 69146..69472 | - | 327 | WP_173667216.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| BJD09_RS24815 () | 69469..69687 | - | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| BJD09_RS24820 () | 69824..70210 | - | 387 | WP_003491149.1 | hypothetical protein | - |
| BJD09_RS24825 () | 70287..70706 | - | 420 | WP_011052981.1 | hypothetical protein | - |
| BJD09_RS24830 () | 70832..71710 | - | 879 | WP_011052982.1 | Type IV secretion system protein virB1 | VF |
| BJD09_RS24835 () | 71721..72743 | - | 1023 | WP_011052983.1 | Type IV secretion system protein VirB11 | VF |
| BJD09_RS24840 () | 72754..73974 | - | 1221 | WP_011052984.1 | Type IV secretion system protein virB10 | VF |
| BJD09_RS24845 () | 73976..74758 | - | 783 | WP_011052985.1 | Type IV secretion system protein virB9 | VF |
| BJD09_RS24850 () | 74783..75457 | - | 675 | WP_011052986.1 | type IV secretion system protein | - |
| BJD09_RS24855 () | 75454..76320 | - | 867 | WP_011052987.1 | type IV secretion system protein | - |
| BJD09_RS24860 () | 76322..76702 | - | 381 | WP_015462616.1 | hypothetical protein | - |
| BJD09_RS24865 () | 76695..76907 | - | 213 | WP_015462617.1 | hypothetical protein | - |
| BJD09_RS24870 () | 76955..77623 | - | 669 | WP_040156235.1 | hypothetical protein | - |
| BJD09_RS24875 () | 77620..80253 | - | 2634 | WP_011052991.1 | Type IV secretion system protein virB4 | VF |
| BJD09_RS24880 () | 80276..80575 | - | 300 | WP_040156233.1 | VirB3 family type IV secretion system protein | - |
| BJD09_RS24885 () | 80572..80949 | - | 378 | WP_011052992.1 | TrbC/VirB2 family protein | - |
| BJD09_RS24890 () | 80970..81260 | - | 291 | WP_003490957.1 | hypothetical protein | - |
| BJD09_RS26285 () | 81573..81788 | + | 216 | WP_155400515.1 | hypothetical protein | - |
| BJD09_RS25280 () | 81953..83039 | - | 1087 | Protein_93 | IS3 family transposase ISXac2 | Transposase |
| BJD09_RS24915 () | 83154..83390 | - | 237 | WP_015462622.1 | Wgr family protein | - |
| BJD09_RS24920 () | 83394..83723 | - | 330 | WP_011052996.1 | partition gene repressor | - |
| BJD09_RS24925 () | 83775..84806 | - | 1032 | WP_011052997.1 | ParB/RepB/Spo0J family partition protein | - |
| BJD09_RS24930 () | 84820..85587 | - | 768 | WP_011052998.1 | ParA family protein | - |
| BJD09_RS24940 () | 86392..87618 | - | 1227 | WP_015472949.1 | plasmid replication initiator protein | - |
| BJD09_RS24945 () | 87898..89085 | - | 1188 | WP_011053001.1 | zeta toxin family protein | - |
| BJD09_RS24950 () | 89092..89355 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| BJD09_RS24955 () | 89380..89781 | - | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| BJD09_RS24960 () | 89778..90038 | - | 261 | WP_011053003.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| BJD09_RS24965 () | 90229..90801 | + | 573 | WP_011053004.1 | Tn3 family transposase ISPsy42 | Transposase |
| BJD09_RS24970 () | 90908..91831 | - | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| BJD09_RS24975 () | 92045..92284 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| BJD09_RS24980 () | 92284..92703 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|