MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93826 bp
Accession: NZ_CP017729 Location: 1..93826 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13 strain SGSC 2193 Replicon: plasmid pSARA13
Accession: NZ_CP017729 Location: 1..93826 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13 strain SGSC 2193 Replicon: plasmid pSARA13
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEETRA13_RS23300 () | 613..994 | + | 382 | Protein_0 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SEETRA13_RS25665 () | 1163..1607 | + | 445 | Protein_1 | site-specific integrase | - |
| SEETRA13_RS23310 () | 1866..2855 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| SEETRA13_RS23315 () | 3349..3645 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| SEETRA13_RS23320 () | 4129..4650 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| SEETRA13_RS23325 () | 5326..5544 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SEETRA13_RS23330 () | 5546..5851 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SEETRA13_RS23335 () | 5853..6143 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| SEETRA13_RS23340 () | 6140..6661 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| SEETRA13_RS23345 () | 6696..7478 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| SEETRA13_RS23350 () | 7487..8200 | + | 714 | Protein_10 | EAL domain-containing protein | - |
| SEETRA13_RS23355 () | 8204..8713 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SEETRA13_RS23360 () | 8707..9192 | + | 486 | WP_000905606.1 | membrane protein | - |
| SEETRA13_RS25670 () | 9469..9756 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| SEETRA13_RS23370 () | 9912..10472 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| SEETRA13_RS23375 () | 10539..10889 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SEETRA13_RS25405 () | 10946..11370 | + | 425 | Protein_16 | IS200/IS605 family transposase | - |
| SEETRA13_RS23385 () | 11497..12147 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SEETRA13_RS23390 () | 12408..13133 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SEETRA13_RS23395 () | 13414..15189 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SEETRA13_RS25675 () | 15241..15408 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| SEETRA13_RS23400 () | 15371..16138 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| SEETRA13_RS23405 () | 16312..16476 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SEETRA13_RS23410 () | 16650..17543 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| SEETRA13_RS23415 () | 18152..19189 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| SEETRA13_RS23420 () | 19378..20403 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| SEETRA13_RS23425 () | 20336..22000 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SEETRA13_RS23430 () | 21984..22544 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| SEETRA13_RS23435 () | 22751..23491 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SEETRA13_RS23440 () | 24146..24634 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| SEETRA13_RS23445 () | 24893..26008 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SEETRA13_RS23450 () | 26094..26510 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| SEETRA13_RS23455 () | 26694..27029 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| SEETRA13_RS23460 () | 27086..27652 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SEETRA13_RS23465 () | 27684..28625 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SEETRA13_RS23470 () | 29040..30245 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SEETRA13_RS23475 () | 30245..31219 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| SEETRA13_RS23480 () | 31301..32576 | - | 1276 | Protein_37 | Y-family DNA polymerase | - |
| SEETRA13_RS23485 () | 32576..32998 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SEETRA13_RS25410 () | 33509..33979 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| SEETRA13_RS23495 () | 33972..34328 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| SEETRA13_RS23505 () | 34710..35390 | + | 681 | WP_000088645.1 | DNA methylase | - |
| SEETRA13_RS23510 () | 35390..35611 | + | 222 | WP_023198184.1 | hypothetical protein | - |
| SEETRA13_RS23515 () | 35667..36080 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| SEETRA13_RS23520 () | 36152..36916 | + | 765 | WP_001246548.1 | membrane protein | - |
| SEETRA13_RS23525 () | 37412..37846 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| SEETRA13_RS23530 () | 37913..38347 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| SEETRA13_RS23535 () | 38583..38906 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| SEETRA13_RS23545 () | 39601..40119 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| SEETRA13_RS23550 () | 40174..40416 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| SEETRA13_RS23555 () | 40485..42482 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| SEETRA13_RS23560 () | 42522..42956 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| SEETRA13_RS23565 () | 42953..43690 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| SEETRA13_RS25680 () | 43939..44097 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| SEETRA13_RS25685 () | 44200..45018 | + | 819 | Protein_54 | DUF945 domain-containing protein | - |
| SEETRA13_RS23580 () | 45329..45799 | - | 471 | WP_014344446.1 | transglycosylase SLT domain-containing protein | - |
| SEETRA13_RS23585 () | 46214..46594 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| SEETRA13_RS23590 () | 46787..47473 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| SEETRA13_RS25445 () | 47567..47794 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| SEETRA13_RS23595 () | 47836..48198 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| SEETRA13_RS23600 () | 48213..48524 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| SEETRA13_RS23605 () | 48546..49112 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| SEETRA13_RS23610 () | 49099..49839 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| SEETRA13_RS23615 () | 49839..51260 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| SEETRA13_RS23620 () | 51250..51846 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| SEETRA13_RS23625 () | 51824..52069 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| SEETRA13_RS23630 () | 52066..52581 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SEETRA13_RS23635 () | 52716..52937 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| SEETRA13_RS23640 () | 52930..53397 | + | 468 | WP_023198173.1 | conjugative transfer protein | - |
| SEETRA13_RS23645 () | 53514..53777 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| SEETRA13_RS23650 () | 53793..56441 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| SEETRA13_RS23655 () | 56416..56802 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| SEETRA13_RS23660 () | 56799..57431 | + | 633 | WP_023139304.1 | type-F conjugative transfer system protein TraW | - |
| SEETRA13_RS23665 () | 57428..58420 | + | 993 | WP_023198135.1 | conjugal transfer pilus assembly protein TraU | - |
| SEETRA13_RS23670 () | 58439..58747 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| SEETRA13_RS23675 () | 58732..59370 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SEETRA13_RS23680 () | 59407..59826 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| SEETRA13_RS23685 () | 59823..61649 | + | 1827 | WP_023198136.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SEETRA13_RS23690 () | 61660..61875 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| SEETRA13_RS23695 () | 61887..62636 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SEETRA13_RS23700 () | 62850..63143 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| SEETRA13_RS23705 () | 63130..63678 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SEETRA13_RS23710 () | 63668..65050 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| SEETRA13_RS23715 () | 65047..67869 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| SEETRA13_RS23720 () | 67885..68379 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| SEETRA13_RS23725 () | 68415..69146 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| SEETRA13_RS23730 () | 69523..71685 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| SEETRA13_RS23735 () | 71694..72092 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SEETRA13_RS23740 () | 72092..72319 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SEETRA13_RS23745 () | 72401..77659 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| SEETRA13_RS23750 () | 77679..78419 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| SEETRA13_RS23755 () | 78474..79037 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| SEETRA13_RS23760 () | 79152..79436 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| SEETRA13_RS23765 () | 79449..79604 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| SEETRA13_RS23770 () | 79770..80211 | + | 442 | Protein_94 | phospholipase | - |
| SEETRA13_RS23775 () | 80390..80656 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| SEETRA13_RS23785 () | 80906..80983 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SEETRA13_RS23790 () | 80964..81845 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| SEETRA13_RS25460 () | 82705..82926 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| SEETRA13_RS23795 () | 83023..83781 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| SEETRA13_RS23800 () | 84048..84605 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| SEETRA13_RS23805 () | 84695..85594 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| SEETRA13_RS25690 () | 85591..85737 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| SEETRA13_RS23810 () | 85727..86380 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| SEETRA13_RS23815 () | 86625..86975 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| SEETRA13_RS23820 () | 86960..87172 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| SEETRA13_RS23825 () | 87604..88479 | - | 876 | WP_078097139.1 | hypothetical protein | - |
| SEETRA13_RS23830 () | 88732..89289 | - | 558 | WP_010999940.1 | membrane protein | - |
| SEETRA13_RS23835 () | 89304..89996 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| SEETRA13_RS23840 () | 89989..92397 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| SEETRA13_RS23845 () | 92625..93143 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| SEETRA13_RS23850 () | 93418..93720 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|