MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90333 bp
Accession: NZ_CP017679 Location: 776778..867110 Organism: Staphylococcus aureus strain CFSAN007883 Replicon: chromosome
Accession: NZ_CP017679 Location: 776778..867110 Organism: Staphylococcus aureus strain CFSAN007883 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB478_RS03800 () | 772662..773657 | + | 996 | WP_001248941.1 | YvcK family protein | - |
| AB478_RS03805 () | 773768..774712 | + | 945 | WP_000006551.1 | DNA-binding protein WhiA | - |
| AB478_RS03815 () | 775282..775869 | + | 588 | WP_001049165.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| AB478_RS03820 () | 776051..777685 | + | 1635 | WP_000675913.1 | NAD-dependent malic enzyme | - |
| AB478_RS03825 () | 778019..778921 | - | 903 | WP_000816303.1 | TIGR01777 family oxidoreductase | - |
| AB478_RS03830 () | 779624..780253 | + | 630 | WP_000070833.1 | DUF4887 domain-containing protein | - |
| AB478_RS03840 () | 781144..782157 | + | 1014 | WP_000654030.1 | sugar-binding transcriptional regulator | - |
| AB478_RS03845 () | 782210..783220 | + | 1011 | WP_000279414.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| AB478_RS03850 () | 783359..784549 | + | 1191 | WP_001074749.1 | phosphoglycerate kinase | - |
| AB478_RS03855 () | 784671..785432 | + | 762 | WP_001260094.1 | triose-phosphate isomerase | - |
| AB478_RS03860 () | 785435..786952 | + | 1518 | WP_001085505.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| AB478_RS03865 () | 787082..788386 | + | 1305 | WP_001121760.1 | phosphopyruvate hydratase | - |
| AB478_RS03870 () | 788725..789183 | + | 459 | WP_000785252.1 | hypothetical protein | - |
| AB478_RS03875 () | 789250..789483 | + | 234 | WP_000556760.1 | preprotein translocase subunit SecG | - |
| AB478_RS03880 () | 789612..790352 | + | 741 | WP_001165974.1 | carboxylesterase | - |
| AB478_RS03885 () | 790386..792758 | + | 2373 | WP_001050031.1 | ribonuclease R | - |
| AB478_RS03890 () | 792780..793244 | + | 465 | WP_001085185.1 | SsrA-binding protein SmpB | - |
| AB478_RS03900 () | 794211..794825 | + | 615 | WP_000999092.1 | stage II sporulation protein M | - |
| AB478_RS03905 () | 795113..795841 | - | 729 | WP_000757406.1 | DUF5067 domain-containing protein | - |
| AB478_RS03910 () | 796275..796439 | + | 165 | WP_078064537.1 | hypothetical protein | - |
| AB478_RS03915 () | 796439..796960 | + | 522 | WP_000608186.1 | hypothetical protein | - |
| AB478_RS03920 () | 797099..797629 | + | 531 | WP_001167167.1 | N-acetyltransferase | - |
| AB478_RS03925 () | 797891..800965 | + | 3075 | WP_057504520.1 | Clumping factor A | VF |
| AB478_RS03930 () | 801186..802694 | + | 1509 | WP_000791714.1 | Staphylocoagulase | VF |
| AB478_RS03935 () | 803045..804067 | + | 1023 | WP_000728059.1 | extracellular matrix protein-binding adhesin Emp | - |
| AB478_RS03940 () | 804533..805069 | - | 537 | WP_078056058.1 | IS30 family transposase ISSau5 | Transposase |
| AB478_RS03945 () | 805050..805553 | - | 504 | WP_000746375.1 | IS30 family transposase ISSau5 | Transposase |
| AB478_RS03950 () | 805662..806003 | - | 342 | WP_001255377.1 | cystatin-like fold lipoprotein | - |
| AB478_RS03955 () | 806059..806649 | - | 591 | WP_000810443.1 | hypothetical protein | - |
| AB478_RS03960 () | 806656..807702 | - | 1047 | WP_000247476.1 | N-acetylmuramoyl-L-alanine amidase domain-containing protein | VF |
| AB478_RS03965 () | 807692..809539 | - | 1848 | WP_000681159.1 | hypothetical protein | - |
| AB478_RS03970 () | 809544..810902 | - | 1359 | WP_001251192.1 | cell division protein FtsK | - |
| AB478_RS03975 () | 810965..811231 | - | 267 | WP_000453449.1 | hypothetical protein | - |
| AB478_RS14145 () | 811890..812063 | - | 174 | WP_001566914.1 | hypothetical protein | - |
| AB478_RS03985 () | 812118..814613 | - | 2496 | WP_001049258.1 | ATP-binding protein | - |
| AB478_RS03990 () | 814648..815031 | - | 384 | WP_000358144.1 | hypothetical protein | - |
| AB478_RS03995 () | 815043..815303 | - | 261 | WP_000015639.1 | hypothetical protein | - |
| AB478_RS04000 () | 815308..816363 | - | 1056 | WP_000692002.1 | conjugal transfer protein | - |
| AB478_RS04005 () | 816424..817515 | - | 1092 | WP_000173102.1 | replication initiation factor domain-containing protein | - |
| AB478_RS04010 () | 817690..817992 | - | 303 | WP_000386891.1 | hypothetical protein | - |
| AB478_RS04015 () | 818006..818326 | - | 321 | WP_000805734.1 | DUF961 family protein | - |
| AB478_RS04020 () | 818477..818761 | - | 285 | WP_000134542.1 | hypothetical protein | - |
| AB478_RS04025 () | 818907..819377 | + | 471 | WP_099143893.1 | hypothetical protein | VF |
| AB478_RS04030 () | 819718..820404 | + | 687 | WP_001823812.1 | thermonuclease family protein | - |
| AB478_RS04035 () | 820761..820961 | + | 201 | WP_001059082.1 | cold-shock protein | - |
| AB478_RS04045 () | 821460..821678 | - | 219 | WP_000005888.1 | hypothetical protein | - |
| AB478_RS04050 () | 821740..822024 | - | 285 | WP_001004397.1 | hypothetical protein | - |
| AB478_RS04055 () | 822112..822681 | - | 570 | WP_001106657.1 | hypothetical protein | - |
| AB478_RS04060 () | 822869..823057 | - | 189 | WP_000052076.1 | hypothetical protein | Toxin Detail |
| AB478_RS04065 () | 823086..823346 | - | 261 | WP_001059690.1 | hypothetical protein | Antitoxin Detail |
| AB478_RS04070 () | 823687..823890 | + | 204 | WP_000145163.1 | sterile alpha motif-like domain-containing protein | - |
| AB478_RS04075 () | 823887..824123 | - | 237 | WP_000368687.1 | hypothetical protein | - |
| AB478_RS04080 () | 824347..824928 | + | 582 | WP_001140697.1 | phosphoglycerate mutase family protein | - |
| AB478_RS04085 () | 825001..825618 | - | 618 | WP_000255554.1 | LysE/ArgO family amino acid transporter | - |
| AB478_RS04090 () | 825774..826268 | - | 495 | WP_000569881.1 | GNAT family N-acetyltransferase | - |
| AB478_RS04095 () | 826667..827089 | - | 423 | WP_000974455.1 | organic hydroperoxide resistance protein | - |
| AB478_RS04100 () | 827237..827953 | + | 717 | WP_000150029.1 | type I 3-dehydroquinate dehydratase | - |
| AB478_RS04105 () | 828036..828575 | + | 540 | WP_000422908.1 | nitroreductase | - |
| AB478_RS04110 () | 828725..829045 | - | 321 | WP_001147955.1 | thioredoxin family protein | - |
| AB478_RS04115 () | 829189..829545 | + | 357 | WP_000589549.1 | arsenate reductase family protein | - |
| AB478_RS04120 () | 829703..830083 | + | 381 | WP_000290491.1 | glycine cleavage system protein GcvH | - |
| AB478_RS04130 () | 830262..831140 | + | 879 | WP_000932206.1 | DUF1963 domain-containing protein | - |
| AB478_RS04135 () | 831963..832349 | + | 387 | WP_001018961.1 | toprim domain-containing protein | - |
| AB478_RS04140 () | 832342..832638 | + | 297 | WP_001065801.1 | thioredoxin family protein | - |
| AB478_RS04145 () | 832888..833913 | + | 1026 | WP_000571213.1 | Methionine import ATP-binding protein MetN 2 | VF |
| AB478_RS04150 () | 833906..834601 | + | 696 | WP_000520233.1 | ABC transporter permease | - |
| AB478_RS04155 () | 834619..835440 | + | 822 | WP_000732334.1 | Methionine-binding lipoprotein MetQ | VF |
| AB478_RS04160 () | 835583..836803 | - | 1221 | WP_000266157.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| AB478_RS04165 () | 836892..837620 | - | 729 | WP_000733774.1 | Enterotoxin type A | VF |
| AB478_RS04170 () | 837644..838372 | - | 729 | WP_001033316.1 | Enterotoxin type A | VF |
| AB478_RS04175 () | 838442..838873 | - | 432 | WP_001228759.1 | hypothetical protein | - |
| AB478_RS04180 () | 838890..839348 | - | 459 | WP_000281657.1 | ImmA/IrrE family metallo-endopeptidase | - |
| AB478_RS04185 () | 839360..839692 | - | 333 | WP_001260004.1 | helix-turn-helix transcriptional regulator | - |
| AB478_RS04190 () | 839885..840148 | + | 264 | WP_000243851.1 | helix-turn-helix domain-containing protein | - |
| AB478_RS04195 () | 840141..840413 | + | 273 | WP_000091731.1 | helix-turn-helix domain-containing protein | - |
| AB478_RS04200 () | 840425..840571 | + | 147 | WP_000784875.1 | hypothetical protein | - |
| AB478_RS04205 () | 840564..840773 | + | 210 | WP_001058486.1 | hypothetical protein | Antitoxin Detail |
| AB478_RS04210 () | 840776..841096 | + | 321 | WP_001103942.1 | DUF1474 family protein | Toxin Detail |
| AB478_RS04215 () | 841160..842029 | + | 870 | WP_001002732.1 | primase alpha helix C-terminal domain-containing protein | - |
| AB478_RS04220 () | 842046..843515 | + | 1470 | WP_000390454.1 | virulence-associated E family protein | - |
| AB478_RS04230 () | 843801..844163 | + | 363 | WP_001039168.1 | hypothetical protein | - |
| AB478_RS04235 () | 844165..844449 | + | 285 | WP_000998181.1 | hypothetical protein | - |
| AB478_RS04240 () | 844446..845087 | + | 642 | WP_001019764.1 | hypothetical protein | - |
| AB478_RS04245 () | 845604..845945 | + | 342 | WP_001190615.1 | hypothetical protein | - |
| AB478_RS04250 () | 845957..846535 | + | 579 | WP_000846285.1 | hypothetical protein | - |
| AB478_RS04255 () | 846553..846771 | + | 219 | WP_000448773.1 | capsid morphogenesis B protein | - |
| AB478_RS04260 () | 846822..847349 | + | 528 | WP_000771368.1 | spore coat protein | - |
| AB478_RS04265 () | 847481..847693 | + | 213 | WP_045181470.1 | hypothetical protein | - |
| AB478_RS04270 () | 847690..848259 | + | 570 | WP_001293067.1 | terminase small subunit | - |
| AB478_RS04275 () | 848567..849367 | + | 801 | WP_000278085.1 | Enterotoxin type B | VF |
| AB478_RS04280 () | 849445..850002 | - | 558 | WP_001035631.1 | DUF4888 domain-containing protein | - |
| AB478_RS04285 () | 850376..850528 | + | 153 | WP_001795626.1 | hypothetical protein | - |
| AB478_RS04290 () | 850599..850709 | + | 111 | WP_000139423.1 | hypothetical protein | - |
| AB478_RS04295 () | 850711..850896 | + | 186 | WP_001286805.1 | hypothetical protein | - |
| AB478_RS04310 () | 852021..852215 | + | 195 | WP_000752917.1 | CsbD family protein | - |
| AB478_RS04315 () | 852449..853300 | - | 852 | WP_001183851.1 | DUF368 domain-containing protein | - |
| AB478_RS04320 () | 853629..854390 | + | 762 | WP_000168845.1 | Fe-S cluster assembly ATPase SufC | - |
| AB478_RS04325 () | 854488..855795 | + | 1308 | WP_000205572.1 | Fe-S cluster assembly protein SufD | - |
| AB478_RS04330 () | 855901..857151 | + | 1251 | WP_193432400.1 | cysteine desulfurase | - |
| AB478_RS04335 () | 857141..857605 | + | 465 | WP_001010508.1 | SUF system NifU family Fe-S cluster assembly protein | - |
| AB478_RS04340 () | 857756..859153 | + | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| AB478_RS04350 () | 859339..859478 | + | 140 | Protein_805 | hypothetical protein | - |
| AB478_RS04355 () | 859484..859798 | - | 315 | WP_000274032.1 | hypothetical protein | - |
| AB478_RS04360 () | 860163..861203 | + | 1041 | WP_000582332.1 | HlyC/CorC family transporter | - |
| AB478_RS04365 () | 861217..862284 | + | 1068 | WP_031845061.1 | nitronate monooxygenase family protein | - |
| AB478_RS04370 () | 862348..862447 | + | 100 | Protein_809 | hypothetical protein | - |
| AB478_RS04375 () | 862839..863687 | + | 849 | WP_000608125.1 | DUF72 domain-containing protein | - |
| AB478_RS04380 () | 863700..864527 | + | 828 | WP_000927625.1 | sulfite exporter TauE/SafE family protein | - |
| AB478_RS04385 () | 864554..865873 | + | 1320 | WP_001241226.1 | bifunctional metallophosphatase/5'-nucleotidase | - |
| AB478_RS04390 () | 865957..866874 | + | 918 | WP_000201875.1 | lipoyl synthase | - |
| AB478_RS04395 () | 867004..867387 | + | 384 | WP_000598444.1 | YutD family protein | - |
| AB478_RS04400 () | 867466..867732 | - | 267 | WP_000566643.1 | DUF3055 domain-containing protein | - |
| AB478_RS04405 () | 867830..868264 | + | 435 | WP_000273979.1 | DUF86 domain-containing protein | - |
| AB478_RS04410 () | 868264..869043 | + | 780 | WP_000816182.1 | TIGR01457 family HAD-type hydrolase | - |
| AB478_RS04415 () | 869076..870035 | + | 960 | WP_000239125.1 | D-glycerate dehydrogenase | - |
| AB478_RS04420 () | 870289..870399 | + | 111 | WP_001790652.1 | hypothetical protein | - |
| AB478_RS04425 () | 870447..870599 | + | 153 | WP_000837752.1 | teichoic acid D-Ala incorporation-associated protein DltX | - |
| AB478_RS04430 () | 870615..872072 | + | 1458 | WP_000129662.1 | D-alanine--poly(phosphoribitol) ligase subunit DltA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|