MGE detailed information
MGE type: Prophage MGE length: 22914 bp
Accession: NZ_CP017100 Location: 1576886..1599799 Organism: Escherichia coli strain K-12 NEB 5-alpha Replicon: chromosome
Accession: NZ_CP017100 Location: 1576886..1599799 Organism: Escherichia coli strain K-12 NEB 5-alpha Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NEB5A_RS07865 () | 1573401..1574147 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NEB5A_RS07870 () | 1574236..1574922 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| NEB5A_RS07875 () | 1575099..1575302 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NEB5A_RS07880 () | 1575337..1576797 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NEB5A_RS07885 () | 1576886..1578253 | - | 1368 | Protein_1507 | MHS family MFS transporter | - |
| NEB5A_RS25165 () | 1578774..1578887 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| NEB5A_RS07890 () | 1578956..1579189 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NEB5A_RS07895 () | 1579506..1580096 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NEB5A_RS07900 () | 1580194..1580769 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NEB5A_RS07905 () | 1580769..1581731 | - | 963 | WP_001027733.1 | phage tail protein | - |
| NEB5A_RS07910 () | 1581682..1582251 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NEB5A_RS07915 () | 1582640..1582873 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NEB5A_RS07920 () | 1582931..1583341 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NEB5A_RS07925 () | 1583493..1583666 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NEB5A_RS07930 () | 1583838..1583993 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| NEB5A_RS25170 () | 1584072..1584137 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| NEB5A_RS23385 () | 1584140..1584328 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| NEB5A_RS07935 () | 1584339..1584551 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NEB5A_RS07940 () | 1584914..1585411 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NEB5A_RS07945 () | 1585408..1585941 | - | 534 | WP_001092971.1 | lysozyme | - |
| NEB5A_RS07950 () | 1585938..1586249 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| NEB5A_RS07955 () | 1586254..1586469 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NEB5A_RS25595 () | 1586689..1586859 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NEB5A_RS07960 () | 1587223..1587438 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NEB5A_RS07965 () | 1587739..1587951 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NEB5A_RS25175 () | 1588006..1588095 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| NEB5A_RS07970 () | 1588373..1589125 | - | 753 | WP_001047135.1 | antitermination protein | - |
| NEB5A_RS07975 () | 1589139..1590188 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| NEB5A_RS07980 () | 1590190..1590468 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| NEB5A_RS07985 () | 1590535..1590786 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| NEB5A_RS07990 () | 1591003..1591158 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NEB5A_RS07995 () | 1591230..1591517 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NEB5A_RS08000 () | 1591517..1591756 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NEB5A_RS23390 () | 1591781..1592086 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| NEB5A_RS08005 () | 1592289..1592621 | + | 333 | WP_001301033.1 | protein FlxA | - |
| NEB5A_RS08010 () | 1593058..1593207 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| NEB5A_RS08015 () | 1593242..1593520 | - | 279 | Protein_1539 | hypothetical protein | - |
| NEB5A_RS08020 () | 1593504..1593734 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NEB5A_RS08025 () | 1593818..1594225 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NEB5A_RS08030 () | 1594392..1594547 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NEB5A_RS08035 () | 1594707..1594925 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| NEB5A_RS08045 () | 1595493..1595681 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NEB5A_RS08050 () | 1595678..1595869 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NEB5A_RS23405 () | 1595962..1596729 | + | 768 | Protein_1546 | exonuclease | - |
| NEB5A_RS08060 () | 1596726..1597421 | + | 696 | Protein_1547 | IS3 family transposase IS2 | Transposase |
| NEB5A_RS25185 () | 1597435..1598592 | + | 1158 | Protein_1548 | Putative defective protein IntQ ; Integrase | Integrase |
| NEB5A_RS24665 () | 1598612..1598722 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| NEB5A_RS08070 () | 1598780..1599799 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NEB5A_RS08075 () | 1599811..1601025 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NEB5A_RS08080 () | 1601231..1601557 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| NEB5A_RS08085 () | 1601692..1602033 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NEB5A_RS08090 () | 1602068..1602628 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NEB5A_RS08095 () | 1602631..1603341 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NEB5A_RS08100 () | 1603449..1603754 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |