MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 143266 bp
Accession: NZ_CP016987 Location: 2279843..2423108 Organism: Vibrio cholerae strain FORC_055 isolate MFDS Replicon: chromosome
Accession: NZ_CP016987 Location: 2279843..2423108 Organism: Vibrio cholerae strain FORC_055 isolate MFDS Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC55_RS10725 () | 2276218..2278791 | - | 2574 | WP_001235058.1 | ATP-dependent chaperone ClpB | - |
| FORC55_RS10730 () | 2278916..2279638 | - | 723 | WP_001963985.1 | peptidoglycan editing factor PgeF | - |
| FORC55_RS10735 () | 2279641..2280615 | - | 975 | WP_000941105.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| FORC55_RS10740 () | 2280770..2281495 | + | 726 | WP_000877198.1 | outer membrane protein assembly factor BamD | - |
| FORC55_RS10745 () | 2281897..2282223 | + | 327 | WP_000700176.1 | ribosome-associated translation inhibitor RaiA | - |
| FORC55_RS10750 () | 2282462..2283637 | + | 1176 | WP_000130282.1 | prephenate dehydratase | - |
| FORC55_RS10755 () | 2283821..2284861 | + | 1041 | WP_000595734.1 | PotD/PotF family extracellular solute-binding protein | - |
| FORC55_RS10760 () | 2284845..2287220 | + | 2376 | WP_096070630.1 | GGDEF and EAL domain-containing protein | - |
| FORC55_RS10765 () | 2287168..2287692 | + | 525 | WP_001226223.1 | inosine/xanthosine triphosphatase | - |
| FORC55_RS10770 () | 2287770..2288081 | - | 312 | WP_000250613.1 | trp operon repressor | - |
| FORC55_RS10775 () | 2288136..2290082 | - | 1947 | WP_096070631.1 | murein transglycosylase | - |
| FORC55_RS10780 () | 2290444..2292111 | + | 1668 | WP_000852863.1 | energy-dependent translational throttle protein EttA | - |
| FORC55_RS10785 () | 2292282..2292653 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| FORC55_RS10790 () | 2292720..2293847 | - | 1128 | WP_000257623.1 | T-protein | VF |
| FORC55_RS10795 () | 2293860..2294933 | - | 1074 | WP_000747931.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| FORC55_RS10800 () | 2295175..2296851 | + | 1677 | WP_000364246.1 | Sensor histidine kinase BtsS | VF |
| FORC55_RS10805 () | 2296861..2297574 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| FORC55_RS10810 () | 2297601..2298593 | - | 993 | WP_096070632.1 | beta-N-acetylhexosaminidase | - |
| FORC55_RS10815 () | 2298699..2299811 | + | 1113 | WP_001963975.1 | anhydro-N-acetylmuramic acid kinase | - |
| FORC55_RS10820 () | 2299829..2300752 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| FORC55_RS10825 () | 2300776..2302572 | - | 1797 | WP_198302777.1 | sodium:proton antiporter | - |
| FORC55_RS10830 () | 2302591..2302932 | - | 342 | WP_005523089.1 | DUF2799 domain-containing protein | - |
| FORC55_RS10835 () | 2303170..2304654 | + | 1485 | WP_096070634.1 | carbon starvation protein A | - |
| FORC55_RS10840 () | 2304790..2305752 | - | 963 | WP_032475670.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| FORC55_RS10845 () | 2305787..2306221 | - | 435 | WP_001963963.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| FORC55_RS10850 () | 2306384..2306899 | - | 516 | WP_001963961.1 | Lipoprotein signal peptidase | VF |
| FORC55_RS10855 () | 2306915..2309764 | - | 2850 | WP_001963960.1 | isoleucine--tRNA ligase | - |
| FORC55_RS10860 () | 2309795..2310763 | - | 969 | WP_000420409.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FORC55_RS10865 () | 2310832..2312394 | - | 1563 | WP_001953642.1 | murein biosynthesis integral membrane protein MurJ | - |
| FORC55_RS10870 () | 2312652..2312912 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| FORC55_RS10875 () | 2312980..2313282 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| FORC55_RS10880 () | 2313504..2314394 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| FORC55_RS10885 () | 2314789..2315937 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| FORC55_RS10890 () | 2316030..2316881 | - | 852 | WP_001250352.1 | thymidylate synthase | - |
| FORC55_RS10895 () | 2316891..2317706 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| FORC55_RS10900 () | 2317735..2318529 | - | 795 | WP_001019423.1 | sulfite exporter TauE/SafE family protein | - |
| FORC55_RS10905 () | 2318539..2320785 | - | 2247 | WP_000952227.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| FORC55_RS10910 () | 2320788..2321306 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| FORC55_RS10915 () | 2321937..2322602 | + | 666 | WP_000801222.1 | DNA mismatch repair endonuclease MutH | - |
| FORC55_RS10920 () | 2322819..2323853 | + | 1035 | WP_069731373.1 | NADP(H)-dependent aldo-keto reductase | - |
| FORC55_RS10925 () | 2323891..2324142 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| FORC55_RS10930 () | 2324720..2326060 | - | 1341 | WP_000107101.1 | Transcriptional regulatory protein ZraR | VF |
| FORC55_RS10935 () | 2326334..2327866 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| FORC55_RS10945 () | 2329165..2330478 | - | 1314 | WP_000815025.1 | branched-chain amino acid transport system II carrier protein | - |
| FORC55_RS10950 () | 2330787..2331509 | + | 723 | WP_096070635.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| FORC55_RS10955 () | 2331597..2332868 | + | 1272 | WP_000597952.1 | ATP-dependent RNA helicase SrmB | - |
| FORC55_RS10960 () | 2332990..2334579 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| FORC55_RS10965 () | 2334836..2335483 | - | 648 | WP_001963954.1 | LexA family transcriptional regulator | - |
| FORC55_RS10970 () | 2335601..2335852 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| FORC55_RS10975 () | 2335908..2336777 | + | 870 | WP_001963951.1 | hypothetical protein | - |
| FORC55_RS10980 () | 2336818..2337426 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| FORC55_RS10985 () | 2337413..2337961 | + | 549 | WP_001963950.1 | lytic transglycosylase domain-containing protein | - |
| FORC55_RS10990 () | 2337958..2338257 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| FORC55_RS10995 () | 2338254..2338787 | + | 534 | WP_001963948.1 | flagellar transcriptional activator family protein | - |
| FORC55_RS11000 () | 2338970..2339281 | + | 312 | WP_154597603.1 | hypothetical protein | - |
| FORC55_RS11005 () | 2339580..2341186 | - | 1607 | Protein_2054 | DUF3387 domain-containing protein | - |
| FORC55_RS19835 () | 2341163..2341351 | - | 189 | Protein_2055 | IS66 family transposase | - |
| FORC55_RS11010 () | 2341550..2343094 | + | 1545 | WP_032475666.1 | Aerotaxis receptor | VF |
| FORC55_RS11015 () | 2343127..2344251 | - | 1125 | WP_001963943.1 | IS630 family transposase ISAzo9 | Transposase |
| FORC55_RS11020 () | 2344325..2344564 | + | 240 | WP_001963942.1 | MarR family transcriptional regulator | - |
| FORC55_RS11025 () | 2344646..2344930 | + | 285 | WP_050553755.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FORC55_RS11030 () | 2344956..2345225 | + | 270 | WP_032475673.1 | XRE family transcriptional regulator | Antitoxin Detail |
| FORC55_RS11035 () | 2345723..2349292 | - | 3570 | WP_001963938.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| FORC55_RS11040 () | 2349296..2350684 | - | 1389 | WP_029628494.1 | conjugal transfer protein TraH | - |
| FORC55_RS11045 () | 2350687..2351631 | - | 945 | WP_096070636.1 | thioredoxin family protein | - |
| FORC55_RS11050 () | 2351923..2353485 | - | 1563 | WP_096070637.1 | sensor domain-containing diguanylate cyclase | - |
| FORC55_RS11055 () | 2353774..2354094 | + | 321 | WP_096070608.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11060 () | 2354091..2354444 | + | 354 | WP_096070609.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11065 () | 2354504..2356036 | + | 1533 | WP_096070610.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11070 () | 2356324..2357808 | + | 1485 | WP_046225202.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| FORC55_RS11080 () | 2359251..2359958 | - | 708 | WP_096070639.1 | hypothetical protein | - |
| FORC55_RS11085 () | 2360046..2361119 | - | 1074 | WP_096070640.1 | toprim domain-containing protein | - |
| FORC55_RS11090 () | 2361210..2361551 | - | 342 | WP_096070641.1 | plasmid-related protein | - |
| FORC55_RS11095 () | 2361551..2362048 | - | 498 | WP_000797298.1 | DNA repair protein RadC | - |
| FORC55_RS11100 () | 2362130..2363785 | - | 1656 | WP_002156790.1 | VWA domain-containing protein | - |
| FORC55_RS11105 () | 2363855..2364295 | - | 441 | WP_002156789.1 | hypothetical protein | - |
| FORC55_RS11110 () | 2364357..2365310 | - | 954 | WP_096070642.1 | DUF3150 domain-containing protein | - |
| FORC55_RS11115 () | 2365409..2366176 | - | 768 | WP_096070643.1 | hypothetical protein | - |
| FORC55_RS11120 () | 2366176..2367135 | - | 960 | WP_096070644.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| FORC55_RS11125 () | 2367345..2368361 | - | 1017 | WP_096070645.1 | YqaJ viral recombinase family protein | - |
| FORC55_RS19840 () | 2368422..2368565 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| FORC55_RS11130 () | 2368647..2369465 | - | 819 | WP_096070646.1 | phage recombination protein Bet | - |
| FORC55_RS11135 () | 2369545..2369964 | - | 420 | WP_096070647.1 | single-stranded DNA-binding protein | - |
| FORC55_RS11140 () | 2369980..2370306 | - | 327 | WP_054104224.1 | plasmid-related protein | - |
| FORC55_RS11145 () | 2370674..2371111 | + | 438 | Protein_2084 | hypothetical protein | - |
| FORC55_RS11150 () | 2371145..2372677 | - | 1533 | WP_096070610.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11155 () | 2372737..2373090 | - | 354 | WP_096070609.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11160 () | 2373087..2373407 | - | 321 | WP_096070608.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11170 () | 2373768..2375402 | - | 1635 | WP_001963921.1 | BCCT family transporter | - |
| FORC55_RS11175 () | 2375593..2376339 | - | 747 | WP_001963920.1 | 3'-5' exonuclease | - |
| FORC55_RS11180 () | 2376339..2378219 | - | 1881 | WP_096070649.1 | cyclic nucleotide-binding/CBS domain-containing protein | - |
| FORC55_RS11185 () | 2378307..2379911 | - | 1605 | WP_198302739.1 | putative signaling protein | VF |
| FORC55_RS11190 () | 2379946..2380854 | - | 909 | WP_096070651.1 | GGDEF domain-containing protein | - |
| FORC55_RS11195 () | 2380933..2382342 | - | 1410 | WP_096070652.1 | dihydrolipoyl dehydrogenase | - |
| FORC55_RS11200 () | 2382357..2382641 | - | 285 | WP_096070653.1 | ferritin-like domain-containing protein | - |
| FORC55_RS11205 () | 2382663..2383352 | - | 690 | WP_096070654.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| FORC55_RS11210 () | 2383337..2384335 | - | 999 | WP_096070655.1 | amidoligase family protein | - |
| FORC55_RS19845 () | 2384339..2384851 | - | 513 | WP_198302740.1 | rhodanese-like domain-containing protein | - |
| FORC55_RS19850 () | 2384856..2385725 | - | 870 | WP_198302741.1 | MBL fold metallo-hydrolase | - |
| FORC55_RS11220 () | 2385784..2387025 | - | 1242 | WP_157732802.1 | DUF2254 domain-containing protein | - |
| FORC55_RS11225 () | 2387179..2387640 | - | 462 | WP_096070657.1 | hypothetical protein | - |
| FORC55_RS11230 () | 2387676..2387963 | - | 288 | WP_096070658.1 | coiled coil domain-containing protein | - |
| FORC55_RS11240 () | 2388386..2388706 | + | 321 | WP_096070608.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11245 () | 2388703..2389056 | + | 354 | WP_096070609.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11250 () | 2389116..2390648 | + | 1533 | WP_096070610.1 | IS66 family transposase ISVa11 | Transposase |
| FORC55_RS11255 () | 2390681..2394241 | - | 3561 | Protein_2105 | conjugal transfer protein TraN | - |
| FORC55_RS11260 () | 2394244..2395272 | - | 1029 | WP_096070659.1 | TraU family protein | - |
| FORC55_RS11265 () | 2395256..2396380 | - | 1125 | WP_096070660.1 | pilus assembly protein | - |
| FORC55_RS11270 () | 2396391..2396903 | - | 513 | WP_172689549.1 | S26 family signal peptidase | - |
| FORC55_RS11275 () | 2396887..2397234 | - | 348 | WP_077671741.1 | plasmid-related protein | - |
| FORC55_RS11280 () | 2397227..2399626 | - | 2400 | WP_096070661.1 | type IV secretion system protein TraC | - |
| FORC55_RS11285 () | 2399626..2400318 | - | 693 | WP_096070662.1 | DsbC family protein | - |
| FORC55_RS11290 () | 2400687..2400953 | + | 267 | WP_000212004.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FORC55_RS11295 () | 2400944..2401456 | + | 513 | WP_096070663.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FORC55_RS11300 () | 2401492..2401878 | - | 387 | WP_000180225.1 | hypothetical protein | - |
| FORC55_RS11305 () | 2401875..2402447 | - | 573 | WP_024008834.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FORC55_RS11310 () | 2402522..2403811 | - | 1290 | WP_096070664.1 | TraB/VirB10 family protein | - |
| FORC55_RS11315 () | 2403811..2404710 | - | 900 | WP_096070810.1 | type-F conjugative transfer system secretin TraK | - |
| FORC55_RS11320 () | 2404694..2405320 | - | 627 | WP_096070665.1 | pilus assembly protein | - |
| FORC55_RS11325 () | 2405317..2405598 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| FORC55_RS11330 () | 2405788..2406894 | - | 1107 | WP_096070666.1 | Fic family protein | - |
| FORC55_RS11335 () | 2407033..2407668 | - | 636 | WP_032481061.1 | DUF4400 domain-containing protein | - |
| FORC55_RS11340 () | 2407655..2408215 | - | 561 | WP_096070667.1 | conjugative transfer protein | - |
| FORC55_RS11345 () | 2408225..2410045 | - | 1821 | WP_096070668.1 | conjugative transfer system coupling protein TraD | - |
| FORC55_RS11350 () | 2410094..2412231 | - | 2138 | Protein_2124 | TraI domain-containing protein | - |
| FORC55_RS11355 () | 2412327..2412629 | + | 303 | WP_096070669.1 | hypothetical protein | - |
| FORC55_RS11365 () | 2412849..2413769 | - | 921 | WP_096070524.1 | IS5 family transposase ISVa2 | Transposase |
| FORC55_RS11370 () | 2413919..2415133 | - | 1215 | WP_032479293.1 | Serine/threonine-protein kinase toxin HipA | VF |
| FORC55_RS11375 () | 2415126..2415446 | - | 321 | WP_032479294.1 | helix-turn-helix transcriptional regulator | - |
| FORC55_RS11385 () | 2416514..2418571 | + | 2058 | WP_000160067.1 | putative signaling protein | VF |
| FORC55_RS11390 () | 2418560..2419009 | - | 450 | WP_000214241.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| FORC55_RS11395 () | 2419006..2419413 | - | 408 | WP_000953213.1 | DNA polymerase III subunit psi | - |
| FORC55_RS11400 () | 2419524..2420027 | - | 504 | WP_000908537.1 | N-acetyltransferase | - |
| FORC55_RS11405 () | 2420011..2420538 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| FORC55_RS11410 () | 2420771..2422825 | + | 2055 | WP_001111415.1 | putative signaling protein | VF |
| FORC55_RS11415 () | 2422933..2423946 | + | 1014 | WP_000421325.1 | U32 family peptidase | - |
| FORC55_RS11420 () | 2423958..2424836 | + | 879 | WP_000872505.1 | U32 family peptidase | - |
| FORC55_RS11425 () | 2424895..2426232 | - | 1338 | WP_000981933.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| FORC55_RS11430 () | 2426275..2426682 | - | 408 | WP_002023797.1 | MarR family transcriptional regulator | - |
| FORC55_RS11435 () | 2426781..2427692 | - | 912 | WP_032469888.1 | lipoprotein NlpI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|