MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 30116 bp
Accession: NZ_CP015602 Location: 1..30116 Organism: Pseudomonas antarctica strain PAMC 27494 Replicon: plasmid pP27494_2
Accession: NZ_CP015602 Location: 1..30116 Organism: Pseudomonas antarctica strain PAMC 27494 Replicon: plasmid pP27494_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7J50_RS30035 () | 225..929 | - | 705 | WP_064455134.1 | type IV secretion system family protein | - |
| A7J50_RS30040 () | 939..3689 | - | 2751 | WP_064455135.1 | Type IV secretion system protein virB4 | VF |
| A7J50_RS30045 () | 3708..3980 | - | 273 | WP_064455136.1 | Type IV secretion system protein virB2 | VF |
| A7J50_RS30050 () | 3980..4600 | - | 621 | WP_064455137.1 | Type IV secretion system protein virB1 | VF |
| A7J50_RS30060 () | 4956..5234 | - | 279 | WP_064455139.1 | hypothetical protein | - |
| A7J50_RS30065 () | 5279..5737 | - | 459 | WP_064455140.1 | hypothetical protein | - |
| A7J50_RS30070 () | 5989..6210 | - | 222 | WP_064455141.1 | helix-turn-helix domain-containing protein | - |
| A7J50_RS30080 () | 7147..7959 | + | 813 | WP_156526341.1 | plasmid replication protein repA | - |
| A7J50_RS30085 () | 8723..9019 | + | 297 | WP_064455144.1 | hypothetical protein | - |
| A7J50_RS31255 () | 9087..9326 | + | 240 | WP_082896019.1 | antitoxin | Antitoxin Detail |
| A7J50_RS30090 () | 9319..9720 | + | 402 | WP_064455169.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| A7J50_RS30095 () | 9736..10182 | + | 447 | WP_064455145.1 | hypothetical protein | - |
| A7J50_RS30100 () | 10981..11523 | + | 543 | WP_064455146.1 | hypothetical protein | - |
| A7J50_RS30105 () | 11526..12671 | + | 1146 | WP_064455147.1 | hypothetical protein | - |
| A7J50_RS30110 () | 12681..13016 | - | 336 | WP_064455148.1 | FxLYD domain-containing protein | - |
| A7J50_RS30115 () | 13275..13505 | + | 231 | WP_064455149.1 | antitoxin | Antitoxin Detail |
| A7J50_RS30120 () | 13505..13903 | + | 399 | WP_064455150.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| A7J50_RS31260 () | 14155..14334 | + | 180 | WP_082896020.1 | CrpP family protein | - |
| A7J50_RS30125 () | 14331..14543 | + | 213 | WP_064455151.1 | hypothetical protein | - |
| A7J50_RS30130 () | 14540..14947 | + | 408 | WP_156526342.1 | hypothetical protein | - |
| A7J50_RS30135 () | 15314..15565 | + | 252 | WP_064455153.1 | hypothetical protein | - |
| A7J50_RS30140 () | 16443..17252 | + | 810 | WP_064455170.1 | DUF3560 domain-containing protein | - |
| A7J50_RS30145 () | 17470..17730 | + | 261 | WP_064455154.1 | hypothetical protein | - |
| A7J50_RS30150 () | 17727..18347 | + | 621 | WP_064455155.1 | hypothetical protein | - |
| A7J50_RS30155 () | 18401..18724 | + | 324 | WP_064455156.1 | hypothetical protein | - |
| A7J50_RS30160 () | 19063..19512 | - | 450 | WP_064455157.1 | H-NS histone family protein | - |
| A7J50_RS30165 () | 19543..21723 | - | 2181 | WP_064455158.1 | type IA DNA topoisomerase | - |
| A7J50_RS31265 () | 21734..21916 | - | 183 | WP_208604487.1 | hypothetical protein | - |
| A7J50_RS30170 () | 21942..22220 | - | 279 | WP_167353749.1 | kikA from plasmid origin | - |
| A7J50_RS30175 () | 22253..22750 | - | 498 | WP_082896022.1 | hypothetical protein | - |
| A7J50_RS30180 () | 22761..24590 | - | 1830 | WP_082896023.1 | type IV secretory system conjugative DNA transfer family protein | - |
| A7J50_RS30185 () | 24577..24954 | - | 378 | WP_064455162.1 | hypothetical protein | - |
| A7J50_RS30190 () | 25057..26100 | - | 1044 | WP_064455163.1 | Type IV secretion system protein VirB11 | VF |
| A7J50_RS30195 () | 26103..27242 | - | 1140 | WP_064455164.1 | Protein virB10 | VF |
| A7J50_RS30200 () | 27226..28059 | - | 834 | WP_082896025.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| A7J50_RS30205 () | 28146..28832 | - | 687 | WP_064455166.1 | Type IV secretion system protein virB8 | VF |
| A7J50_RS30210 () | 28950..30017 | - | 1068 | WP_064455167.1 | type IV secretion system protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|