MGE detailed information
MGE type: Conjugative plasmid MGE length: 89067 bp
Accession: NZ_CP015388 Location: 1..89067 Organism: Klebsiella pneumoniae strain NY9 Replicon: plasmid pNY9_3
Accession: NZ_CP015388 Location: 1..89067 Organism: Klebsiella pneumoniae strain NY9 Replicon: plasmid pNY9_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6P56_RS34435 () | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| A6P56_RS30345 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| A6P56_RS34205 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| A6P56_RS30355 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| A6P56_RS30360 () | 3271..6168 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| A6P56_RS30365 () | 6263..6868 | + | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| A6P56_RS30370 () | 6892..7641 | - | 750 | Protein_7 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| A6P56_RS30375 () | 7630..8037 | + | 408 | WP_001214976.1 | cysteine hydrolase | - |
| A6P56_RS30380 () | 8175..9059 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| A6P56_RS30385 () | 9091..10290 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| A6P56_RS30390 () | 10396..11046 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| A6P56_RS30395 () | 11078..11320 | - | 243 | WP_032140899.1 | hypothetical protein | - |
| A6P56_RS30400 () | 11362..12876 | - | 1515 | Protein_13 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| A6P56_RS30405 () | 12942..13646 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| A6P56_RS30410 () | 13790..14344 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| A6P56_RS30415 () | 14475..15305 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| A6P56_RS30420 () | 15443..15883 | + | 441 | Protein_17 | CatB-related O-acetyltransferase | - |
| A6P56_RS30425 () | 15937..16641 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| A6P56_RS30430 () | 16706..18949 | - | 2244 | Protein_19 | Tn3 family transposase TnpA_Tn3 | Transposase |
| A6P56_RS30435 () | 18963..19295 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| A6P56_RS30440 () | 19342..20217 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| A6P56_RS30450 () | 20473..21735 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| A6P56_RS32840 () | 21941..22135 | - | 195 | Protein_23 | Tn3 family transposase TnpA_Tn3 | Transposase |
| A6P56_RS30460 () | 22299..22856 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| A6P56_RS30465 () | 23039..23899 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| A6P56_RS30470 () | 24046..26517 | - | 2472 | Protein_26 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| A6P56_RS32845 () | 26520..26603 | - | 84 | Protein_27 | helix-turn-helix domain-containing protein | - |
| A6P56_RS30480 () | 26660..27364 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| A6P56_RS30485 () | 27355..27495 | + | 141 | WP_071557810.1 | hypothetical protein | - |
| A6P56_RS30495 () | 27821..28518 | - | 698 | Protein_30 | IS1 family transposase IS1R | Transposase |
| A6P56_RS32115 () | 29721..29955 | + | 235 | Protein_31 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A6P56_RS30525 () | 30083..30364 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| A6P56_RS30530 () | 30487..30837 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| A6P56_RS30535 () | 30840..31802 | - | 963 | WP_075995130.1 | plasmid segregation protein ParM | - |
| A6P56_RS32850 () | 31949..32242 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| A6P56_RS30545 () | 32319..33002 | + | 684 | WP_000085883.1 | DNA methylase | - |
| A6P56_RS30550 () | 33003..33224 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| A6P56_RS30555 () | 33238..33672 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| A6P56_RS34440 () | 33723..34499 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| A6P56_RS30570 () | 34917..35342 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| A6P56_RS30575 () | 35389..35811 | + | 423 | WP_001763816.1 | DUF1380 family protein | - |
| A6P56_RS32120 () | 35808..35999 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| A6P56_RS30590 () | 37037..37267 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| A6P56_RS30595 () | 37319..38680 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| A6P56_RS30600 () | 38727..39290 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| A6P56_RS30625 () | 40139..40666 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| A6P56_RS30630 () | 40724..40957 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| A6P56_RS30635 () | 41018..43041 | + | 2024 | Protein_48 | ParB/RepB/Spo0J family partition protein | - |
| A6P56_RS30640 () | 43110..43544 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| A6P56_RS30645 () | 43541..44260 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 44272..44496 | + | 225 | NuclAT_0 | - | - |
| - () | 44272..44496 | + | 225 | NuclAT_0 | - | - |
| - () | 44272..44496 | + | 225 | NuclAT_0 | - | - |
| - () | 44272..44496 | + | 225 | NuclAT_0 | - | - |
| - () | 44429..44494 | + | 66 | - | - | Antitoxin Detail |
| A6P56_RS34210 () | 44540..44698 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| A6P56_RS30655 () | 45056..45481 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| A6P56_RS30660 () | 45478..45828 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| A6P56_RS30665 () | 45859..47472 | + | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| A6P56_RS34445 () | 47557..47761 | - | 205 | Protein_55 | pilus protein | - |
| A6P56_RS30685 () | 48153..48449 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| A6P56_RS30690 () | 48560..49381 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| A6P56_RS30695 () | 49678..50280 | - | 603 | WP_000243713.1 | hypothetical protein | VF |
| A6P56_RS30700 () | 50603..50986 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| A6P56_RS30705 () | 51180..51851 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| A6P56_RS30710 () | 51988..52161 | + | 174 | WP_075995131.1 | TraY domain-containing protein | - |
| A6P56_RS30720 () | 52262..53242 | - | 981 | WP_000019473.1 | IS5 family transposase ISKpn26 | Transposase |
| A6P56_RS30725 () | 53311..53415 | + | 105 | Protein_63 | TraY domain-containing protein | - |
| A6P56_RS30730 () | 53448..53807 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| A6P56_RS30735 () | 53822..54133 | + | 312 | WP_033550688.1 | type IV conjugative transfer system protein TraL | - |
| A6P56_RS30740 () | 54155..54721 | + | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| A6P56_RS30745 () | 54732..55436 | + | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| A6P56_RS30750 () | 55436..56887 | + | 1452 | WP_075995132.1 | conjugal transfer protein TraB | - |
| A6P56_RS30755 () | 56856..57443 | + | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| A6P56_RS30760 () | 57382..57750 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| A6P56_RS30765 () | 57747..58262 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| A6P56_RS30770 () | 58397..58618 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| A6P56_RS30775 () | 58611..59087 | + | 477 | WP_000549587.1 | hypothetical protein | - |
| A6P56_RS30780 () | 59167..59367 | + | 201 | WP_075995133.1 | hypothetical protein | - |
| A6P56_RS30785 () | 59413..60381 | - | 969 | WP_004099053.1 | IS5 family transposase IS903B | Transposase |
| A6P56_RS30790 () | 60479..60826 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| A6P56_RS30795 () | 60952..63582 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| A6P56_RS30800 () | 63579..63965 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| A6P56_RS30805 () | 63962..64594 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| A6P56_RS30810 () | 64591..65583 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| A6P56_RS30815 () | 65613..65918 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| A6P56_RS30820 () | 65927..66565 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| A6P56_RS30825 () | 66562..68412 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| A6P56_RS30830 () | 68439..68696 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| A6P56_RS30835 () | 68683..69432 | + | 750 | WP_001336806.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| A6P56_RS30840 () | 69446..69790 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| A6P56_RS30845 () | 69909..70193 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| A6P56_RS30850 () | 70180..70725 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A6P56_RS30855 () | 70655..71002 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| A6P56_RS30860 () | 70950..71375 | + | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| A6P56_RS30865 () | 71353..72735 | + | 1383 | WP_001309243.1 | conjugal transfer protein TraH | - |
| A6P56_RS30870 () | 72732..75554 | + | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| A6P56_RS30875 () | 75570..76055 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| A6P56_RS30880 () | 76104..76835 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| A6P56_RS30885 () | 77038..77775 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| A6P56_RS30890 () | 77826..80024 | + | 2199 | WP_000009332.1 | type IV conjugative transfer system coupling protein TraD | - |
| A6P56_RS30895 () | 80024..85294 | + | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| A6P56_RS30900 () | 85314..86060 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| A6P56_RS30905 () | 86119..86844 | + | 726 | Protein_99 | putative protein YcjY | VF |
| A6P56_RS30920 () | 86900..87597 | + | 698 | Protein_100 | IS1 family transposase IS1R | Transposase |
| A6P56_RS30925 () | 87679..88269 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| A6P56_RS30930 () | 88509..88763 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|