MGE detailed information
MGE type: Prophage MGE length: 88705 bp
Accession: NZ_CP015281 Location: 4007649..4096353 Organism: Photorhabdus laumondii subsp. laumondii strain DSPV002N Replicon: chromosome
Accession: NZ_CP015281 Location: 4007649..4096353 Organism: Photorhabdus laumondii subsp. laumondii strain DSPV002N Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4R40_RS17410 () | 4004246..4004593 | + | 348 | WP_011147559.1 | outer membrane protein assembly factor BamE | - |
| A4R40_RS17415 () | 4004649..4004942 | - | 294 | WP_011147560.1 | RnfH family protein | - |
| A4R40_RS17420 () | 4004935..4005369 | - | 435 | WP_011147561.1 | type II toxin-antitoxin system RatA family toxin | - |
| A4R40_RS17425 () | 4005526..4006008 | + | 483 | WP_011147562.1 | SsrA-binding protein SmpB | - |
| A4R40_RS17435 () | 4006925..4007074 | + | 150 | WP_071824172.1 | helix-turn-helix transcriptional regulator | - |
| A4R40_RS17440 () | 4007217..4007501 | + | 285 | WP_011147564.1 | type I toxin-antitoxin system SymE family toxin | - |
| A4R40_RS17445 () | 4007649..4008095 | - | 447 | WP_011147565.1 | tail fiber assembly protein | - |
| A4R40_RS17450 () | 4008096..4009208 | - | 1113 | WP_082302866.1 | phage tail protein | - |
| A4R40_RS17455 () | 4009426..4010031 | - | 606 | WP_011147567.1 | DUF2612 domain-containing protein | - |
| A4R40_RS17460 () | 4010032..4011273 | - | 1242 | WP_041380244.1 | baseplate J/gp47 family protein | - |
| A4R40_RS17465 () | 4011273..4011629 | - | 357 | WP_011147569.1 | hypothetical protein | - |
| A4R40_RS26105 () | 4011728..4011901 | - | 174 | WP_011147570.1 | hypothetical protein | - |
| A4R40_RS17470 () | 4012058..4012591 | - | 534 | WP_011147571.1 | hypothetical protein | - |
| A4R40_RS17475 () | 4013055..4013654 | - | 600 | WP_109791732.1 | oxidoreductase | - |
| A4R40_RS17480 () | 4013614..4014510 | - | 897 | WP_011147573.1 | hypothetical protein | - |
| A4R40_RS17485 () | 4014507..4014812 | - | 306 | WP_011147574.1 | hypothetical protein | - |
| A4R40_RS17490 () | 4014809..4015630 | - | 822 | WP_011147575.1 | hypothetical protein | - |
| A4R40_RS17495 () | 4015630..4017747 | - | 2118 | WP_041380246.1 | lytic transglycosylase domain-containing protein | - |
| A4R40_RS17505 () | 4017956..4018363 | - | 408 | WP_011147577.1 | hypothetical protein | - |
| A4R40_RS17510 () | 4018363..4018800 | - | 438 | WP_011147578.1 | hypothetical protein | - |
| A4R40_RS17515 () | 4018800..4020287 | - | 1488 | WP_011147579.1 | DUF3383 domain-containing protein | - |
| A4R40_RS17520 () | 4020268..4020699 | - | 432 | WP_173362531.1 | hypothetical protein | - |
| A4R40_RS17525 () | 4020810..4021181 | - | 372 | WP_011147581.1 | hypothetical protein | - |
| A4R40_RS17530 () | 4021178..4021636 | - | 459 | WP_011147582.1 | hypothetical protein | - |
| A4R40_RS17535 () | 4021636..4022085 | - | 450 | WP_011147583.1 | DUF4054 domain-containing protein | - |
| A4R40_RS17540 () | 4022090..4022416 | - | 327 | WP_011147584.1 | hypothetical protein | - |
| A4R40_RS17545 () | 4022417..4023451 | - | 1035 | WP_011147585.1 | DUF2184 domain-containing protein | - |
| A4R40_RS17550 () | 4023451..4023927 | - | 477 | WP_011147586.1 | hypothetical protein | - |
| A4R40_RS17555 () | 4023930..4025255 | - | 1326 | WP_011147587.1 | DUF2213 domain-containing protein | - |
| A4R40_RS17560 () | 4025273..4025965 | - | 693 | WP_040149365.1 | head morphogenesis protein | - |
| A4R40_RS17565 () | 4026051..4027475 | - | 1425 | WP_109791985.1 | DUF1073 domain-containing protein | - |
| A4R40_RS17570 () | 4027534..4028739 | - | 1206 | WP_071824128.1 | PBSX family phage terminase large subunit | - |
| A4R40_RS17575 () | 4028799..4029518 | - | 720 | WP_011147591.1 | terminase small subunit | - |
| A4R40_RS17580 () | 4029597..4029914 | - | 318 | WP_011147592.1 | hypothetical protein | - |
| A4R40_RS17585 () | 4030027..4030865 | + | 839 | Protein_3358 | IS5 family transposase ISPlu7 | Transposase |
| A4R40_RS17590 () | 4031308..4032207 | - | 900 | WP_011147593.1 | DUF4868 domain-containing protein | - |
| A4R40_RS17595 () | 4032227..4032745 | - | 519 | WP_011147594.1 | hypothetical protein | - |
| A4R40_RS17600 () | 4032876..4033325 | - | 450 | WP_011147595.1 | lysis protein | - |
| A4R40_RS17605 () | 4033418..4033954 | - | 537 | WP_011147596.1 | lysozyme | - |
| A4R40_RS17610 () | 4033938..4034120 | - | 183 | WP_011147597.1 | phage holin family protein | - |
| A4R40_RS17615 () | 4034281..4034682 | + | 402 | WP_011147598.1 | hypothetical protein | - |
| A4R40_RS17620 () | 4034726..4035298 | - | 573 | Protein_3365 | site-specific DNA-methyltransferase | - |
| A4R40_RS17625 () | 4036099..4036347 | - | 249 | WP_011147600.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS17630 () | 4036436..4036690 | - | 255 | WP_041380249.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS17635 () | 4036795..4037052 | + | 258 | WP_011147602.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS17640 () | 4037153..4037605 | - | 453 | WP_011147603.1 | tail fiber assembly protein | - |
| A4R40_RS17645 () | 4038281..4038583 | - | 303 | Protein_3370 | phage tail protein | - |
| A4R40_RS17650 () | 4038585..4039163 | - | 579 | WP_109791986.1 | phage tail protein I | - |
| A4R40_RS17655 () | 4039153..4040256 | - | 1104 | WP_011147606.1 | baseplate J/gp47 family protein | - |
| A4R40_RS17660 () | 4040247..4040600 | - | 354 | WP_041380251.1 | GPW/gp25 family protein | - |
| A4R40_RS17665 () | 4040647..4041252 | - | 606 | WP_011147608.1 | phage baseplate assembly protein V | - |
| A4R40_RS17670 () | 4041249..4042427 | - | 1179 | WP_011147609.1 | phage late control D family protein | - |
| A4R40_RS17675 () | 4042415..4042627 | - | 213 | WP_036777198.1 | tail protein X | - |
| A4R40_RS17680 () | 4042630..4043514 | - | 885 | WP_011147610.1 | phage tail protein | - |
| A4R40_RS17685 () | 4043514..4046066 | - | 2553 | WP_011147611.1 | phage tail tape measure protein | - |
| A4R40_RS26305 () | 4046070..4046279 | - | 210 | WP_109791733.1 | GpE family phage tail protein | - |
| A4R40_RS17695 () | 4046212..4046475 | - | 264 | Protein_3380 | phage tail assembly protein | - |
| A4R40_RS17705 () | 4046733..4047257 | - | 525 | WP_011147613.1 | phage major tail tube protein | - |
| A4R40_RS17710 () | 4047257..4048684 | - | 1428 | WP_011147614.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| A4R40_RS17715 () | 4048674..4048886 | - | 213 | WP_011147615.1 | hypothetical protein | - |
| A4R40_RS17720 () | 4048883..4049350 | - | 468 | WP_011147616.1 | Gp37 family protein | - |
| A4R40_RS17725 () | 4049350..4049787 | - | 438 | WP_041380252.1 | DUF1320 domain-containing protein | - |
| A4R40_RS17730 () | 4049789..4050139 | - | 351 | WP_011147618.1 | DUF2190 family protein | - |
| A4R40_RS17735 () | 4050153..4051088 | - | 936 | WP_011147619.1 | hypothetical protein | - |
| A4R40_RS17740 () | 4051120..4052214 | - | 1095 | WP_011147620.1 | hypothetical protein | - |
| A4R40_RS17745 () | 4052419..4052868 | - | 450 | WP_011147621.1 | phage virion morphogenesis protein | - |
| A4R40_RS17750 () | 4052861..4053691 | - | 831 | WP_041380253.1 | minor capsid protein | - |
| A4R40_RS17755 () | 4053672..4055165 | - | 1494 | WP_011147623.1 | DUF935 domain-containing protein | - |
| A4R40_RS17760 () | 4055165..4056688 | - | 1524 | WP_011147624.1 | hypothetical protein | - |
| A4R40_RS17765 () | 4056685..4057230 | - | 546 | WP_011147625.1 | DUF3486 family protein | - |
| A4R40_RS17770 () | 4057230..4057541 | - | 312 | WP_011147626.1 | hypothetical protein | - |
| A4R40_RS17775 () | 4057534..4057866 | - | 333 | WP_011147627.1 | hypothetical protein | - |
| A4R40_RS17780 () | 4057863..4058486 | - | 624 | WP_011147628.1 | hypothetical protein | - |
| A4R40_RS17785 () | 4058476..4059093 | - | 618 | WP_011147629.1 | transglycosylase SLT domain-containing protein | - |
| A4R40_RS17790 () | 4059096..4059446 | - | 351 | WP_011147630.1 | putative holin | - |
| A4R40_RS17795 () | 4059697..4060467 | + | 771 | WP_011147631.1 | DNA adenine methylase | - |
| A4R40_RS17800 () | 4060515..4060952 | - | 438 | WP_011147632.1 | hypothetical protein | - |
| A4R40_RS17805 () | 4060970..4061335 | - | 366 | WP_125043781.1 | hypothetical protein | - |
| A4R40_RS17810 () | 4061436..4061780 | - | 345 | WP_041380254.1 | prepilin peptidase | - |
| A4R40_RS17815 () | 4061816..4062250 | - | 435 | Protein_3403 | helix-turn-helix transcriptional regulator | - |
| A4R40_RS17820 () | 4062300..4062485 | + | 186 | WP_041380255.1 | DNA-binding protein | - |
| A4R40_RS17825 () | 4062541..4062849 | + | 309 | WP_011147637.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS26115 () | 4062869..4063825 | + | 957 | WP_041380256.1 | hypothetical protein | - |
| A4R40_RS17840 () | 4063879..4065663 | + | 1785 | WP_011147639.1 | hypothetical protein ; Integrase | Integrase |
| A4R40_RS17845 () | 4065902..4067074 | + | 1173 | WP_011147640.1 | AAA family ATPase | - |
| A4R40_RS17850 () | 4067533..4067724 | + | 192 | WP_011147641.1 | hypothetical protein | - |
| A4R40_RS17855 () | 4067823..4068262 | + | 440 | Protein_3410 | regulatory protein GemA | - |
| A4R40_RS17860 () | 4068246..4068614 | + | 369 | WP_011147643.1 | DNA-binding protein | - |
| A4R40_RS17865 () | 4068796..4069263 | - | 468 | Protein_3412 | site-specific DNA-methyltransferase | - |
| A4R40_RS17870 () | 4069364..4069564 | - | 201 | WP_011147645.1 | hypothetical protein | - |
| A4R40_RS17875 () | 4069744..4070259 | - | 516 | Protein_3414 | antiterminator | - |
| A4R40_RS17880 () | 4070247..4070544 | - | 298 | Protein_3415 | hypothetical protein | - |
| A4R40_RS17885 () | 4070560..4071153 | - | 594 | WP_011147649.1 | DUF1367 family protein | - |
| A4R40_RS17890 () | 4071254..4072453 | - | 1200 | WP_011147650.1 | XRE family transcriptional regulator | - |
| A4R40_RS17895 () | 4072469..4073139 | - | 671 | Protein_3418 | hypothetical protein | - |
| A4R40_RS17900 () | 4073566..4074933 | - | 1368 | WP_011147652.1 | replicative DNA helicase | - |
| A4R40_RS17905 () | 4074935..4075519 | - | 585 | WP_011147653.1 | ATP-binding protein | - |
| A4R40_RS17910 () | 4075528..4076280 | - | 753 | WP_011147654.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS17915 () | 4076283..4076507 | - | 225 | WP_011147655.1 | hypothetical protein | - |
| A4R40_RS17920 () | 4076522..4076971 | - | 450 | WP_011147656.1 | hypothetical protein | - |
| A4R40_RS17925 () | 4077029..4077256 | - | 228 | WP_041380257.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS26310 () | 4077397..4077576 | + | 180 | Protein_3425 | hypothetical protein | - |
| A4R40_RS17935 () | 4078794..4079138 | + | 345 | WP_011147660.1 | hypothetical protein | - |
| A4R40_RS17940 () | 4079314..4080339 | + | 1026 | WP_011144720.1 | IS630 family transposase ISPlu19 | Transposase |
| A4R40_RS26120 () | 4080346..4080504 | + | 159 | WP_011147661.1 | hypothetical protein | - |
| A4R40_RS17945 () | 4080518..4082278 | + | 1761 | WP_011147662.1 | hypothetical protein | - |
| A4R40_RS17950 () | 4082275..4082772 | + | 498 | WP_011147663.1 | siphovirus Gp157 family protein | - |
| A4R40_RS17955 () | 4082824..4083012 | + | 189 | WP_011147664.1 | hypothetical protein | - |
| A4R40_RS26125 () | 4083582..4083752 | + | 171 | WP_011147665.1 | hypothetical protein | - |
| A4R40_RS17960 () | 4083757..4083972 | + | 216 | WP_011147666.1 | hypothetical protein | - |
| A4R40_RS17965 () | 4083924..4085107 | + | 1184 | Protein_3434 | Putative defective protein IntQ ; Integrase | Integrase |
| A4R40_RS26135 () | 4085553..4085768 | - | 216 | WP_049789790.1 | hypothetical protein | - |
| A4R40_RS17975 () | 4085832..4086062 | + | 231 | WP_011147669.1 | hypothetical protein | - |
| A4R40_RS17980 () | 4086059..4086328 | + | 270 | WP_011147670.1 | helix-turn-helix domain-containing protein | - |
| A4R40_RS17985 () | 4086676..4087086 | - | 411 | WP_109791736.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| A4R40_RS17990 () | 4087140..4087313 | - | 174 | WP_011147672.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| A4R40_RS17995 () | 4087433..4089081 | - | 1649 | Protein_3440 | hypothetical protein | - |
| A4R40_RS18000 () | 4089081..4089617 | - | 537 | WP_041380260.1 | hypothetical protein | - |
| A4R40_RS18005 () | 4089589..4090197 | - | 609 | WP_011147676.1 | hypothetical protein | - |
| A4R40_RS18010 () | 4090317..4090936 | - | 620 | Protein_3443 | tail fiber assembly protein | - |
| A4R40_RS18015 () | 4090936..4092723 | - | 1788 | WP_109791737.1 | phage tail protein | - |
| A4R40_RS18020 () | 4093016..4093421 | - | 406 | Protein_3445 | IS607 family transposase ISLhe9 | Transposase |
| A4R40_RS18025 () | 4093496..4093865 | + | 370 | Protein_3446 | DUF2938 family protein | - |
| A4R40_RS18030 () | 4094454..4094741 | - | 288 | WP_109791738.1 | hypothetical protein | - |
| A4R40_RS18035 () | 4095769..4096353 | - | 585 | WP_058589031.1 | putative adenosine monophosphate-protein transferase fic | VF |
| A4R40_RS18040 () | 4096361..4096843 | - | 483 | WP_011147684.1 | hypothetical protein | - |
| A4R40_RS18045 () | 4096923..4097453 | - | 531 | WP_011147685.1 | GNAT family N-acetyltransferase | - |
| A4R40_RS18050 () | 4097663..4098322 | - | 660 | WP_011147686.1 | polymer-forming cytoskeletal protein | - |
| A4R40_RS18055 () | 4099069..4099473 | - | 405 | WP_011147687.1 | hypothetical protein | - |
| A4R40_RS18060 () | 4100134..4100409 | + | 276 | WP_011147688.1 | hypothetical protein | - |
| A4R40_RS18065 () | 4100617..4101072 | + | 456 | WP_011147689.1 | GNAT family N-acetyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Photorhabdus luminescens subsp. laumondii TTO1 | Prophage | TA21013 | NC_005126 | 4007219..4096355 | 0 |