MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 52137 bp
Accession: NZ_CP015281 Location: 2130712..2182848 Organism: Photorhabdus laumondii subsp. laumondii strain DSPV002N Replicon: chromosome
Accession: NZ_CP015281 Location: 2130712..2182848 Organism: Photorhabdus laumondii subsp. laumondii strain DSPV002N Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4R40_RS09220 () | 2126139..2126552 | + | 414 | WP_011146059.1 | CoA-binding protein | - |
| A4R40_RS09225 () | 2128483..2128803 | - | 321 | WP_011146062.1 | heat shock protein HspQ | - |
| A4R40_RS09230 () | 2129027..2129305 | + | 279 | WP_058588663.1 | acylphosphatase | - |
| A4R40_RS09235 () | 2129319..2129648 | - | 330 | WP_041380794.1 | sulfurtransferase TusE | - |
| A4R40_RS09245 () | 2129981..2130220 | + | 240 | WP_125043751.1 | hypothetical protein | - |
| A4R40_RS09250 () | 2131018..2132043 | + | 1026 | WP_109791477.1 | IS630 family transposase ISPlu3 | Transposase |
| A4R40_RS09255 () | 2132247..2132786 | + | 540 | WP_109791478.1 | hypothetical protein | - |
| A4R40_RS09260 () | 2133557..2133691 | + | 135 | Protein_1758 | subtype I-F CRISPR-associated endonuclease Cas1 | - |
| A4R40_RS09265 () | 2133688..2136969 | + | 3282 | WP_109791479.1 | type I-F CRISPR-associated helicase Cas3 | - |
| A4R40_RS09270 () | 2137063..2137323 | + | 261 | WP_011146069.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| A4R40_RS09275 () | 2138003..2139361 | + | 1359 | WP_011146070.1 | type I-F CRISPR-associated protein Csy1 | - |
| A4R40_RS09280 () | 2139358..2140326 | + | 969 | WP_109791480.1 | type I-F CRISPR-associated protein Csy2 | - |
| A4R40_RS09285 () | 2140350..2141363 | + | 1014 | WP_011146072.1 | type I-F CRISPR-associated protein Csy3 | - |
| A4R40_RS09290 () | 2141373..2141927 | + | 555 | WP_011146073.1 | type I-F CRISPR-associated endoribonuclease Cas6/Csy4 | - |
| A4R40_RS09295 () | 2143512..2144339 | - | 828 | WP_109791481.1 | 5-deoxy-glucuronate isomerase | - |
| A4R40_RS09300 () | 2144387..2145277 | - | 891 | WP_109791482.1 | myo-inosose-2 dehydratase | - |
| A4R40_RS09305 () | 2145307..2147211 | - | 1905 | WP_109791483.1 | 5-dehydro-2-deoxygluconokinase | - |
| A4R40_RS09310 () | 2147287..2148420 | - | 1134 | WP_109791484.1 | Gfo/Idh/MocA family oxidoreductase | - |
| A4R40_RS09315 () | 2148955..2150658 | - | 1704 | WP_058589473.1 | solute:sodium symporter family transporter | - |
| A4R40_RS09320 () | 2150774..2151760 | - | 987 | WP_011146081.1 | inositol 2-dehydrogenase | - |
| A4R40_RS09325 () | 2152126..2154060 | - | 1935 | WP_205854480.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| A4R40_RS09330 () | 2154077..2155588 | - | 1512 | WP_109791486.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| A4R40_RS09335 () | 2155892..2156725 | + | 834 | WP_011146084.1 | MurR/RpiR family transcriptional regulator | - |
| A4R40_RS09340 () | 2156934..2157293 | + | 360 | WP_058589470.1 | hypothetical protein | - |
| A4R40_RS09345 () | 2157563..2157898 | + | 336 | WP_011146086.1 | tRNA-binding protein | - |
| A4R40_RS09350 () | 2157955..2158662 | + | 708 | WP_058589488.1 | Exoenzyme S synthesis regulatory protein ExsA | VF |
| A4R40_RS09355 () | 2158730..2159017 | + | 288 | WP_058589469.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A4R40_RS09360 () | 2159032..2159358 | + | 327 | WP_011146089.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| A4R40_RS09365 () | 2159566..2161104 | - | 1539 | WP_011146090.1 | peptide MFS transporter | - |
| A4R40_RS09370 () | 2161828..2162769 | - | 942 | WP_109791487.1 | Lipid A biosynthesis lauroyltransferase | VF |
| A4R40_RS09375 () | 2163056..2163292 | + | 237 | WP_011146092.1 | DinI family protein | - |
| A4R40_RS09380 () | 2163536..2164594 | + | 1059 | WP_011146093.1 | rhodanese-related sulfurtransferase | - |
| A4R40_RS09385 () | 2164640..2165242 | - | 603 | WP_011146094.1 | response regulator transcription factor | - |
| A4R40_RS09390 () | 2165446..2165700 | - | 255 | WP_011146095.1 | biofilm formation regulator BssS | - |
| A4R40_RS09395 () | 2165893..2166945 | - | 1053 | WP_011146096.1 | dihydroorotase | - |
| A4R40_RS09400 () | 2167336..2168220 | - | 885 | WP_011144786.1 | IS982 family transposase ISPlu6 | Transposase |
| A4R40_RS09405 () | 2168567..2169415 | + | 849 | WP_011146097.1 | hypothetical protein | - |
| A4R40_RS09410 () | 2169579..2169797 | + | 219 | WP_041380034.1 | AlpA family transcriptional regulator | - |
| A4R40_RS09415 () | 2169955..2170272 | + | 318 | WP_041380798.1 | hypothetical protein | - |
| A4R40_RS09420 () | 2170360..2170671 | + | 312 | WP_011146099.1 | hypothetical protein | - |
| A4R40_RS09425 () | 2170746..2171714 | - | 969 | WP_011145223.1 | IS30 family transposase ISPlu1 | Transposase |
| A4R40_RS09430 () | 2171836..2172132 | + | 297 | Protein_1792 | hypothetical protein | - |
| A4R40_RS09435 () | 2172089..2172436 | + | 348 | Protein_1793 | IS4 family transposase ISPlu9 | Transposase |
| A4R40_RS09440 () | 2172451..2172768 | + | 318 | Protein_1794 | hypothetical protein | - |
| A4R40_RS09445 () | 2172778..2173053 | + | 276 | WP_041380036.1 | membrane protein | - |
| A4R40_RS09450 () | 2173094..2174968 | - | 1875 | WP_011146101.1 | KAP family NTPase | - |
| A4R40_RS09455 () | 2175029..2176543 | - | 1515 | WP_011146102.1 | MobA/MobL family protein | - |
| A4R40_RS09460 () | 2177344..2177733 | + | 390 | WP_011146104.1 | hypothetical protein | - |
| A4R40_RS09465 () | 2177726..2178043 | + | 318 | WP_011146105.1 | conjugal transfer protein TraD | - |
| A4R40_RS09470 () | 2178378..2179391 | - | 1014 | WP_109791488.1 | hypothetical protein | - |
| A4R40_RS09475 () | 2179414..2181000 | - | 1587 | WP_125043755.1 | hypothetical protein | - |
| A4R40_RS09480 () | 2181726..2182811 | + | 1086 | WP_011146110.1 | DUF4297 domain-containing protein | - |
| A4R40_RS09485 () | 2182871..2184604 | + | 1734 | WP_109791489.1 | hypothetical protein | - |
| A4R40_RS09490 () | 2184688..2185951 | - | 1264 | Protein_1804 | integrase arm-type DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Photorhabdus luminescens subsp. laumondii TTO1 | Integrative and Conjugative Element | TA20999 | NC_005126 | 2130712..2182848 | 0.004 |