MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 81401 bp
Accession: NZ_CP015021 Location: 1..81401 Organism: Escherichia coli strain 28RC1 Replicon: plasmid p28RC1
Accession: NZ_CP015021 Location: 1..81401 Organism: Escherichia coli strain 28RC1 Replicon: plasmid p28RC1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ARC77_RS28460 () | 305..652 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| ARC77_RS28465 () | 702..2240 | + | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| ARC77_RS28470 () | 2355..2441 | - | 87 | Protein_3 | IS3 family transposase ISEhe3 | Transposase |
| ARC77_RS28475 () | 2886..5582 | + | 2697 | WP_001358886.1 | Metalloprotease StcE | VF |
| ARC77_RS28480 () | 5669..6544 | + | 876 | WP_001302175.1 | Type II secretion system protein C | VF |
| ARC77_RS28485 () | 6545..8512 | + | 1968 | WP_001302177.1 | Type II secretion system protein D | VF |
| ARC77_RS28490 () | 8512..10017 | + | 1506 | WP_000092338.1 | Type II secretion system protein E | VF |
| ARC77_RS28495 () | 10019..11242 | + | 1224 | WP_001173152.1 | Type II secretion system protein F | VF |
| ARC77_RS28500 () | 11273..11707 | + | 435 | WP_001231211.1 | Type II secretion system protein G | VF |
| ARC77_RS28505 () | 11704..12258 | + | 555 | WP_000082929.1 | Putative type II secretion system protein H | VF |
| ARC77_RS28510 () | 12273..12620 | + | 348 | WP_000173396.1 | Type II secretion system protein I | VF |
| ARC77_RS28515 () | 12617..13216 | + | 600 | WP_000082782.1 | Type II secretion system protein J | VF |
| ARC77_RS28520 () | 13213..14190 | + | 978 | WP_000776550.1 | Putative type II secretion system protein K | VF |
| ARC77_RS28525 () | 14229..15401 | + | 1173 | WP_071525076.1 | Type II secretion system protein L | VF |
| ARC77_RS28530 () | 15388..15900 | + | 513 | WP_001004187.1 | Type II secretion system protein M | VF |
| ARC77_RS28535 () | 15958..16791 | + | 834 | WP_000096786.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| ARC77_RS28540 () | 16883..17284 | + | 402 | WP_000971918.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| ARC77_RS28550 () | 17463..18634 | + | 1172 | Protein_18 | IS3 family transposase ISLad1 | Transposase |
| ARC77_RS33240 () | 19175..19688 | + | 514 | Protein_19 | enterohemolysin-activating lysine-acyltransferase EhxC | - |
| ARC77_RS28560 () | 19690..22686 | + | 2997 | WP_000217733.1 | Hemolysin, chromosomal | VF |
| ARC77_RS28565 () | 22736..24856 | + | 2121 | WP_000987091.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| ARC77_RS28570 () | 24860..26299 | + | 1440 | WP_001213545.1 | Hemolysin secretion protein D, chromosomal | VF |
| ARC77_RS33495 () | 26420..26912 | + | 493 | Protein_23 | Transcriptional repressor MprA | VF |
| ARC77_RS32280 () | 27043..27273 | + | 231 | WP_010891288.1 | hypothetical protein | - |
| ARC77_RS28590 () | 27394..28134 | + | 741 | WP_001066920.1 | IS91 family transposase ISMno23 | Transposase |
| ARC77_RS28595 () | 28419..29396 | - | 978 | WP_000361615.1 | RepB family plasmid replication initiator protein | - |
| ARC77_RS28605 () | 29804..30004 | - | 201 | WP_000708307.1 | hypothetical protein | - |
| ARC77_RS28610 () | 30001..30621 | - | 621 | WP_001248529.1 | hypothetical protein | - |
| ARC77_RS28615 () | 30618..31301 | - | 684 | WP_010891291.1 | DNA-binding protein | - |
| ARC77_RS28625 () | 31760..31978 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ARC77_RS28630 () | 31980..32285 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ARC77_RS28635 () | 32286..33092 | + | 807 | WP_000016989.1 | site-specific integrase | - |
| ARC77_RS28650 () | 35082..35444 | + | 363 | Protein_34 | RepB family plasmid replication initiator protein | - |
| ARC77_RS28655 () | 36032..37198 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| ARC77_RS28660 () | 37198..38169 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ARC77_RS28665 () | 38895..39797 | + | 903 | WP_000273919.1 | DUF1281 domain-containing protein | - |
| ARC77_RS32290 () | 39801..40106 | + | 306 | WP_010891292.1 | hypothetical protein | - |
| ARC77_RS28675 () | 40183..40866 | + | 684 | WP_000085945.1 | DNA methylase | - |
| ARC77_RS28680 () | 40867..41088 | + | 222 | WP_001104869.1 | hypothetical protein | - |
| ARC77_RS28685 () | 40982..41536 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| ARC77_RS33500 () | 41582..42358 | + | 777 | WP_001005037.1 | hypothetical protein | - |
| ARC77_RS28695 () | 42899..43201 | + | 303 | WP_010891293.1 | antirestriction protein | - |
| ARC77_RS28700 () | 43248..43670 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| ARC77_RS28705 () | 43667..43858 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| ARC77_RS33505 () | 43828..44337 | - | 510 | WP_032245379.1 | hypothetical protein | - |
| ARC77_RS28715 () | 44854..45084 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| ARC77_RS28720 () | 45136..46497 | + | 1362 | WP_000199442.1 | DUF3560 domain-containing protein | - |
| ARC77_RS28725 () | 46544..47107 | + | 564 | WP_001302171.1 | class I SAM-dependent methyltransferase | - |
| ARC77_RS28730 () | 47193..47648 | - | 456 | WP_001358896.1 | hypothetical protein | - |
| ARC77_RS28735 () | 47718..47924 | + | 207 | WP_000547965.1 | hypothetical protein | - |
| ARC77_RS28740 () | 47950..48402 | + | 453 | WP_000290823.1 | single-stranded DNA-binding protein | - |
| ARC77_RS28745 () | 48459..48692 | + | 234 | WP_000005995.1 | DUF905 family protein | - |
| ARC77_RS28750 () | 48758..50716 | + | 1959 | WP_000117168.1 | ParB/RepB/Spo0J family partition protein | - |
| ARC77_RS28755 () | 50771..51205 | + | 435 | WP_000845908.1 | conjugation system SOS inhibitor PsiB | - |
| ARC77_RS28760 () | 51202..51963 | + | 762 | WP_001276250.1 | plasmid SOS inhibition protein A | - |
| - () | 51932..52130 | + | 199 | NuclAT_0 | - | - |
| - () | 51932..52130 | + | 199 | NuclAT_0 | - | - |
| - () | 51932..52130 | + | 199 | NuclAT_0 | - | - |
| - () | 51932..52130 | + | 199 | NuclAT_0 | - | - |
| ARC77_RS28770 () | 52195..52353 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| ARC77_RS28775 () | 52487..54508 | + | 2022 | Protein_58 | hypothetical protein | Relaxase |
| ARC77_RS28780 () | 54576..55007 | + | 432 | WP_001453090.1 | hypothetical protein | - |
| ARC77_RS33250 () | 55644..55993 | - | 350 | Protein_60 | IS3 family transposase IS3H | Transposase |
| ARC77_RS28790 () | 56087..56350 | + | 264 | Protein_61 | IS21 family transposase ISEc62 | Transposase |
| ARC77_RS33255 () | 56390..56510 | + | 121 | Protein_62 | IS21 family transposase ISEc62 | Transposase |
| ARC77_RS31305 () | 56507..56659 | + | 153 | Protein_63 | IS1 family transposase | - |
| ARC77_RS28795 () | 56766..66274 | + | 9509 | Protein_64 | Toxin B | VF |
| ARC77_RS28800 () | 66348..66572 | + | 225 | Protein_65 | IS3 family transposase IS3H | Transposase |
| ARC77_RS33260 () | 66640..66810 | - | 171 | Protein_66 | IS3 family transposase IS1203 | Transposase |
| ARC77_RS33265 () | 66817..67068 | - | 252 | Protein_67 | IS3 family transposase IS1203 | Transposase |
| ARC77_RS28810 () | 67125..68513 | + | 1389 | Protein_68 | Multifunctional conjugation protein TraI | Relaxase |
| ARC77_RS28815 () | 68533..69279 | + | 747 | WP_000205762.1 | conjugal transfer pilus acetylase TraX | - |
| ARC77_RS28820 () | 69338..70198 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| ARC77_RS28825 () | 70301..70860 | + | 560 | Protein_71 | fertility inhibition protein FinO | - |
| ARC77_RS28830 () | 70993..71205 | + | 213 | WP_001302189.1 | ANR family transcriptional regulator | - |
| ARC77_RS28835 () | 71450..71911 | + | 462 | WP_001233856.1 | thermonuclease family protein | - |
| ARC77_RS28840 () | 71957..72166 | + | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| ARC77_RS28845 () | 72204..72542 | + | 339 | WP_000766796.1 | hypothetical protein | - |
| ARC77_RS28850 () | 72782..73036 | + | 255 | WP_000083831.1 | replication regulatory protein RepA | - |
| ARC77_RS28855 () | 73272..73346 | + | 75 | WP_001370046.1 | RepA leader peptide Tap | - |
| ARC77_RS28860 () | 73339..74196 | + | 858 | WP_000130945.1 | incFII family plasmid replication initiator RepA | - |
| ARC77_RS28865 () | 75108..75392 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| ARC77_RS28870 () | 75392..75667 | + | 276 | WP_000421248.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ARC77_RS28875 () | 75762..75968 | + | 207 | WP_001105064.1 | hypothetical protein | - |
| ARC77_RS28880 () | 76068..76283 | - | 216 | Protein_82 | transposase | - |
| ARC77_RS31335 () | 76327..76893 | - | 567 | Protein_83 | IS3 family transposase ISSd1 | Transposase |
| ARC77_RS28890 () | 76893..77309 | - | 417 | Protein_84 | IS91 family transposase | - |
| ARC77_RS31340 () | 77309..77494 | - | 186 | WP_001302179.1 | hypothetical protein | - |
| ARC77_RS28900 () | 77671..79881 | + | 2211 | WP_000592771.1 | Catalase-peroxidase | VF |
| ARC77_RS28905 () | 79925..80314 | + | 390 | WP_001172748.1 | cytochrome b562 family protein | - |
| ARC77_RS28910 () | 80371..81359 | + | 989 | Protein_88 | IS3 family transposase IS629 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|