MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 102837 bp
Accession: NZ_CP014801 Location: 1..102837 Organism: Salipiger profundus strain JLT2016 Replicon: plasmid pTPRO5
Accession: NZ_CP014801 Location: 1..102837 Organism: Salipiger profundus strain JLT2016 Replicon: plasmid pTPRO5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ga0080559_RS24030 () | 1453..1659 | + | 207 | WP_068117809.1 | hypothetical protein | - |
| Ga0080559_RS24035 () | 2227..2808 | + | 582 | WP_076625785.1 | helix-turn-helix domain-containing protein | - |
| Ga0080559_RS24040 () | 2795..5122 | + | 2328 | WP_076625786.1 | T-DNA border endonuclease VirD2 | Relaxase |
| Ga0080559_RS24045 () | 5131..7146 | + | 2016 | WP_076625864.1 | type IV secretory system conjugative DNA transfer family protein | - |
| Ga0080559_RS24050 () | 7217..7780 | - | 564 | WP_076625865.1 | hypothetical protein | - |
| Ga0080559_RS24060 () | 8343..8594 | + | 252 | WP_076625866.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| Ga0080559_RS24065 () | 8584..8886 | + | 303 | WP_076625788.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Ga0080559_RS24070 () | 8976..9674 | - | 699 | WP_076625789.1 | RES family NAD+ phosphorylase | - |
| Ga0080559_RS24075 () | 9668..10006 | - | 339 | WP_076625867.1 | MbcA/ParS/Xre antitoxin family protein | - |
| Ga0080559_RS24080 () | 10425..12860 | + | 2436 | WP_076625868.1 | DEAD/DEAH box helicase | - |
| Ga0080559_RS24085 () | 12885..13119 | - | 235 | Protein_11 | integrase | - |
| Ga0080559_RS24090 () | 13328..14407 | - | 1080 | WP_076625790.1 | hypothetical protein | VF |
| Ga0080559_RS24095 () | 14414..14818 | - | 405 | WP_076625791.1 | hypothetical protein | - |
| Ga0080559_RS24100 () | 14815..15006 | - | 192 | WP_076625792.1 | hypothetical protein | - |
| Ga0080559_RS24105 () | 15003..15992 | - | 990 | WP_076625793.1 | Type IV secretion system protein VirB11 | VF |
| Ga0080559_RS24110 () | 15994..17388 | - | 1395 | WP_076625794.1 | Type IV secretion system protein PtlG | VF |
| Ga0080559_RS24115 () | 17385..18080 | - | 696 | WP_128549246.1 | Protein virB9 | VF |
| Ga0080559_RS24120 () | 18081..18755 | - | 675 | WP_076625795.1 | type IV secretion system protein | - |
| Ga0080559_RS24125 () | 18745..19515 | - | 771 | WP_128549248.1 | conjugal transfer protein TraF | - |
| Ga0080559_RS24130 () | 19572..20780 | - | 1209 | WP_179949500.1 | lytic transglycosylase domain-containing protein | - |
| Ga0080559_RS26700 () | 20716..20883 | - | 168 | WP_164845646.1 | hypothetical protein | - |
| Ga0080559_RS24135 () | 20880..23243 | - | 2364 | WP_076625798.1 | type IV secretion system protein B4 | - |
| Ga0080559_RS24140 () | 23233..23511 | - | 279 | WP_076625799.1 | VirB3 family type IV secretion system protein | - |
| Ga0080559_RS24145 () | 23524..23823 | - | 300 | WP_076625800.1 | Type IV secretion system protein virB2 | VF |
| Ga0080559_RS24150 () | 23829..24440 | - | 612 | WP_076625801.1 | lytic transglycosylase domain-containing protein | - |
| Ga0080559_RS24155 () | 24484..24840 | - | 357 | WP_028288544.1 | hypothetical protein | - |
| Ga0080559_RS24160 () | 25054..25305 | + | 252 | WP_076625870.1 | hypothetical protein | - |
| Ga0080559_RS24165 () | 25463..25720 | + | 258 | WP_076625802.1 | helix-turn-helix domain-containing protein | - |
| Ga0080559_RS24170 () | 25961..26683 | - | 723 | WP_128549249.1 | hypothetical protein | - |
| Ga0080559_RS24175 () | 26819..27067 | - | 249 | WP_076625803.1 | hypothetical protein | - |
| Ga0080559_RS24180 () | 27307..28398 | - | 1092 | WP_128549247.1 | 3-oxoadipyl-CoA thiolase | - |
| Ga0080559_RS26460 () | 28407..28511 | - | 105 | Protein_32 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| Ga0080559_RS24185 () | 28780..30267 | - | 1488 | WP_076625804.1 | aldehyde dehydrogenase | - |
| Ga0080559_RS24190 () | 30288..31652 | - | 1365 | WP_076625805.1 | MmgE/PrpD family protein | - |
| Ga0080559_RS24195 () | 31815..32966 | + | 1152 | WP_076625806.1 | Cyclohexane-1-carbonyl-CoA dehydrogenase | VF |
| Ga0080559_RS24200 () | 32982..34673 | + | 1692 | WP_076625807.1 | CoA transferase | - |
| Ga0080559_RS24205 () | 34982..35926 | + | 945 | WP_076625808.1 | transcriptional regulator GcvA | - |
| Ga0080559_RS24210 () | 35956..36942 | - | 987 | WP_076625809.1 | MBL fold metallo-hydrolase | - |
| Ga0080559_RS26465 () | 37091..37258 | - | 168 | WP_157895899.1 | hypothetical protein | - |
| Ga0080559_RS26470 () | 37263..37358 | + | 96 | Protein_40 | transposase | - |
| Ga0080559_RS24220 () | 37578..38789 | + | 1212 | WP_076625810.1 | ABC transporter substrate-binding protein | - |
| Ga0080559_RS24225 () | 38847..39599 | + | 753 | WP_076625811.1 | ABC transporter ATP-binding protein | - |
| Ga0080559_RS24230 () | 39592..40308 | + | 717 | WP_076625812.1 | ABC transporter ATP-binding protein | - |
| Ga0080559_RS24235 () | 40324..41208 | + | 885 | WP_076625813.1 | branched-chain amino acid ABC transporter permease | - |
| Ga0080559_RS24240 () | 41205..42209 | + | 1005 | WP_083697985.1 | branched-chain amino acid ABC transporter permease | - |
| Ga0080559_RS24245 () | 42253..42579 | + | 327 | WP_157895900.1 | OB-fold domain-containing protein | - |
| Ga0080559_RS24250 () | 42581..43729 | + | 1149 | WP_076625816.1 | thiolase family protein | - |
| Ga0080559_RS24255 () | 43737..44483 | + | 747 | WP_076625817.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| Ga0080559_RS24260 () | 44492..45292 | + | 801 | WP_076625818.1 | enoyl-CoA hydratase/isomerase family protein | - |
| Ga0080559_RS26740 () | 45298..46353 | + | 1056 | WP_076625819.1 | nitroreductase family protein | - |
| Ga0080559_RS24270 () | 46363..47112 | - | 750 | WP_076625820.1 | 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 | VF |
| Ga0080559_RS24275 () | 47404..48438 | + | 1035 | WP_076625821.1 | IS110 family transposase ISMex9 | Transposase |
| Ga0080559_RS24280 () | 48747..48992 | - | 246 | Protein_53 | ISKra4 family transposase ISSusp4 | Transposase |
| Ga0080559_RS24285 () | 49027..49272 | + | 246 | WP_076625822.1 | DUF1772 domain-containing protein | - |
| Ga0080559_RS26480 () | 49285..50445 | + | 1161 | WP_076625823.1 | FAD-dependent oxidoreductase | - |
| Ga0080559_RS26050 () | 50827..51428 | - | 602 | Protein_56 | IS110 family transposase ISAzs32 | Transposase |
| Ga0080559_RS24300 () | 51432..52514 | + | 1083 | Protein_57 | strawberry notch C-terminal domain-containing protein | - |
| Ga0080559_RS24305 () | 52511..53558 | + | 1048 | Protein_58 | toprim domain-containing protein | - |
| Ga0080559_RS24310 () | 53859..54770 | + | 912 | WP_076625825.1 | DUF2493 domain-containing protein | - |
| Ga0080559_RS24315 () | 54779..55072 | - | 294 | WP_076625826.1 | helix-turn-helix domain-containing protein | - |
| Ga0080559_RS24320 () | 55069..55410 | - | 342 | WP_076625872.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Ga0080559_RS24330 () | 56051..56389 | + | 339 | WP_076625827.1 | DUF736 family protein | - |
| Ga0080559_RS24335 () | 56589..57773 | + | 1185 | WP_076625828.1 | Cell division protein PomZ | VF |
| Ga0080559_RS24340 () | 57773..58744 | + | 972 | WP_076625829.1 | plasmid partitioning protein RepB | - |
| Ga0080559_RS24345 () | 58986..60278 | + | 1293 | WP_076625830.1 | replication protein C | - |
| Ga0080559_RS24350 () | 60291..61388 | - | 1098 | WP_076625831.1 | tyrosine-type recombinase/integrase | - |
| Ga0080559_RS24355 () | 61539..63185 | + | 1647 | WP_076625832.1 | DDE-type integrase/transposase/recombinase | - |
| Ga0080559_RS24360 () | 63176..64114 | + | 939 | WP_076625833.1 | TniB family NTP-binding protein | - |
| Ga0080559_RS24365 () | 64111..65169 | + | 1059 | WP_076625834.1 | TniQ family protein | - |
| Ga0080559_RS24370 () | 65315..66199 | + | 885 | WP_076625835.1 | DUF1403 family protein | - |
| Ga0080559_RS24375 () | 66202..66798 | + | 597 | WP_076625836.1 | SMC-Scp complex subunit ScpB | - |
| Ga0080559_RS24380 () | 66932..67396 | + | 465 | WP_076625837.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| Ga0080559_RS24385 () | 67393..67968 | + | 576 | WP_076625838.1 | PIN domain-containing protein | Toxin Detail |
| Ga0080559_RS24390 () | 68088..69005 | - | 918 | WP_076625839.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| Ga0080559_RS24395 () | 68995..69825 | - | 831 | WP_076625840.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| Ga0080559_RS24400 () | 70087..71154 | - | 1068 | WP_076625841.1 | patatin-like phospholipase family protein | - |
| Ga0080559_RS24405 () | 71631..72998 | - | 1368 | WP_076625842.1 | nucleotidyltransferase | - |
| Ga0080559_RS24410 () | 73138..73473 | + | 336 | WP_057790503.1 | helix-turn-helix domain-containing protein | - |
| Ga0080559_RS24415 () | 73470..74357 | + | 888 | WP_076625843.1 | ImmA/IrrE family metallo-endopeptidase | - |
| Ga0080559_RS24425 () | 74762..78325 | - | 3564 | WP_128549293.1 | tetratricopeptide repeat protein | - |
| Ga0080559_RS24430 () | 78577..78891 | - | 315 | WP_076625845.1 | hypothetical protein | - |
| Ga0080559_RS24435 () | 78907..79113 | - | 207 | WP_076625846.1 | DUF3892 domain-containing protein | - |
| Ga0080559_RS24440 () | 79116..80264 | - | 1149 | WP_076625847.1 | ImmA/IrrE family metallo-endopeptidase | - |
| Ga0080559_RS24445 () | 80261..80980 | - | 720 | WP_076625848.1 | hypothetical protein | - |
| Ga0080559_RS24460 () | 81914..82837 | + | 924 | WP_076625849.1 | DUF1738 domain-containing protein | - |
| Ga0080559_RS24465 () | 82928..83317 | + | 390 | WP_076625850.1 | DUF3768 domain-containing protein | - |
| Ga0080559_RS24470 () | 83469..85442 | + | 1974 | WP_076625851.1 | ParB/RepB/Spo0J family partition protein | - |
| Ga0080559_RS24475 () | 85513..86106 | + | 594 | WP_076625852.1 | regulator | - |
| Ga0080559_RS26055 () | 86235..86489 | + | 255 | Protein_89 | IS110 family transposase ISPko7 | Transposase |
| Ga0080559_RS24480 () | 86600..87604 | - | 1005 | WP_076622778.1 | Tyrosine recombinase XerC | VF |
| Ga0080559_RS24485 () | 87601..88971 | - | 1371 | WP_076622777.1 | tyrosine-type recombinase/integrase | - |
| Ga0080559_RS24490 () | 88968..90200 | - | 1233 | WP_076622776.1 | IS91 family transposase ISAzo26 | Transposase |
| Ga0080559_RS24495 () | 90261..91116 | + | 856 | Protein_93 | IS110 family transposase ISMdi12 | Transposase |
| Ga0080559_RS24500 () | 91421..92077 | + | 657 | WP_076625853.1 | hypothetical protein | - |
| Ga0080559_RS24505 () | 92190..96449 | + | 4260 | WP_076625854.1 | strawberry notch family protein | - |
| Ga0080559_RS24510 () | 96574..96960 | + | 387 | WP_076625855.1 | hypothetical protein | - |
| Ga0080559_RS24515 () | 96962..97399 | + | 438 | WP_076625856.1 | hypothetical protein | - |
| Ga0080559_RS24520 () | 97402..97680 | + | 279 | WP_076625857.1 | hypothetical protein | - |
| Ga0080559_RS24525 () | 97762..98040 | + | 279 | WP_076625873.1 | hypothetical protein | - |
| Ga0080559_RS24530 () | 98158..98886 | + | 729 | WP_076625858.1 | DUF736 family protein | - |
| Ga0080559_RS24535 () | 99106..99336 | + | 231 | WP_076625859.1 | hypothetical protein | - |
| Ga0080559_RS24540 () | 99360..99743 | + | 384 | WP_076625860.1 | hypothetical protein | - |
| Ga0080559_RS24545 () | 99727..100479 | + | 753 | WP_076625861.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| Ga0080559_RS24550 () | 100476..100982 | + | 507 | WP_083697988.1 | DNA repair protein RadC | - |
| Ga0080559_RS24555 () | 100979..101314 | - | 336 | WP_076625862.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Ga0080559_RS24560 () | 101314..101589 | - | 276 | WP_076625863.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|