MGE detailed information
MGE type: Prophage MGE length: 24250 bp
Accession: NZ_CP014272 Location: 1735171..1759420 Organism: Escherichia coli K-12 strain K-12 C3026 Replicon: chromosome
Accession: NZ_CP014272 Location: 1735171..1759420 Organism: Escherichia coli K-12 strain K-12 C3026 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3026_RS08865 () | 1731686..1732432 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C3026_RS08870 () | 1732521..1733207 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C3026_RS08875 () | 1733384..1733587 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C3026_RS08880 () | 1733622..1735082 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| C3026_RS08885 () | 1735171..1736538 | - | 1368 | Protein_1722 | MHS family MFS transporter | - |
| C3026_RS28095 () | 1737059..1737172 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| C3026_RS08890 () | 1737241..1737474 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C3026_RS08895 () | 1737791..1738381 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C3026_RS08900 () | 1738479..1739054 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C3026_RS08905 () | 1739054..1740016 | - | 963 | WP_001027733.1 | phage tail protein | - |
| C3026_RS08910 () | 1739967..1740536 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| C3026_RS08915 () | 1740925..1741158 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C3026_RS08920 () | 1741216..1741626 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C3026_RS08925 () | 1741778..1741951 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C3026_RS08930 () | 1742123..1742278 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| C3026_RS28100 () | 1742357..1742422 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| C3026_RS25805 () | 1742425..1742613 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| C3026_RS08935 () | 1742624..1742836 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C3026_RS08940 () | 1743199..1743696 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C3026_RS08945 () | 1743693..1744226 | - | 534 | WP_001092971.1 | lysozyme | - |
| C3026_RS08950 () | 1744223..1744534 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| C3026_RS08955 () | 1744539..1744754 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C3026_RS28690 () | 1744974..1745144 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C3026_RS08960 () | 1745508..1745723 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C3026_RS08965 () | 1746024..1746236 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C3026_RS28105 () | 1746291..1746380 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| C3026_RS08970 () | 1746658..1747410 | - | 753 | WP_001047135.1 | antitermination protein | - |
| C3026_RS08975 () | 1747424..1748473 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| C3026_RS08980 () | 1748475..1748753 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| C3026_RS08985 () | 1748820..1749071 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| C3026_RS08990 () | 1749288..1749443 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C3026_RS08995 () | 1749515..1749802 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C3026_RS09000 () | 1749802..1750041 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C3026_RS25810 () | 1750066..1750371 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| C3026_RS09005 () | 1750574..1750906 | + | 333 | WP_001301033.1 | protein FlxA | - |
| C3026_RS09010 () | 1751343..1751492 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| C3026_RS09015 () | 1751527..1751805 | - | 279 | Protein_1754 | hypothetical protein | - |
| C3026_RS09020 () | 1751789..1752019 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C3026_RS09025 () | 1752103..1752510 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C3026_RS09030 () | 1752677..1752832 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C3026_RS09035 () | 1752992..1753210 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| C3026_RS09045 () | 1753778..1753966 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C3026_RS09050 () | 1753963..1754154 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C3026_RS25825 () | 1754247..1755014 | + | 768 | Protein_1761 | exonuclease | - |
| C3026_RS09060 () | 1755011..1755706 | + | 696 | Protein_1762 | IS3 family transposase IS2 | Transposase |
| C3026_RS28115 () | 1755720..1756025 | + | 306 | Protein_1763 | DUF3596 domain-containing protein | - |
| C3026_RS09080 () | 1757356..1758213 | + | 858 | Protein_1765 | N-ethylmaleimide reductase ; Integrase | Integrase |
| C3026_RS27410 () | 1758233..1758343 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| C3026_RS09085 () | 1758401..1759420 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| C3026_RS09090 () | 1759432..1760646 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C3026_RS09095 () | 1760852..1761178 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| C3026_RS09100 () | 1761313..1761654 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| C3026_RS09105 () | 1761689..1762249 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C3026_RS09110 () | 1762252..1762962 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C3026_RS09115 () | 1763070..1763375 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |