MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP014270 Location: 1536107..1559149 Organism: Escherichia coli K-12 strain K-12 DHB4 Replicon: chromosome
Accession: NZ_CP014270 Location: 1536107..1559149 Organism: Escherichia coli K-12 strain K-12 DHB4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DHB4_RS07635 () | 1532622..1533368 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| DHB4_RS07640 () | 1533457..1534143 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DHB4_RS07645 () | 1534320..1534523 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DHB4_RS07650 () | 1534558..1536018 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| DHB4_RS07655 () | 1536107..1537474 | - | 1368 | Protein_1459 | MHS family MFS transporter | - |
| DHB4_RS26550 () | 1537995..1538108 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| DHB4_RS07660 () | 1538177..1538410 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DHB4_RS07665 () | 1538727..1539317 | + | 591 | WP_000078177.1 | recombinase family protein | - |
| DHB4_RS07670 () | 1539415..1539990 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| DHB4_RS07675 () | 1539990..1540952 | - | 963 | WP_001027733.1 | phage tail protein | - |
| DHB4_RS07680 () | 1540903..1541472 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| DHB4_RS07685 () | 1541861..1542094 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DHB4_RS07690 () | 1542152..1542562 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DHB4_RS07695 () | 1542714..1542887 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DHB4_RS07700 () | 1543059..1543214 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| DHB4_RS26555 () | 1543293..1543358 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| DHB4_RS24465 () | 1543361..1543549 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| DHB4_RS07705 () | 1543560..1543772 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DHB4_RS07710 () | 1544135..1544632 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DHB4_RS07715 () | 1544629..1545162 | - | 534 | WP_001092971.1 | lysozyme | - |
| DHB4_RS07720 () | 1545159..1545470 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| DHB4_RS07725 () | 1545475..1545690 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DHB4_RS27155 () | 1545910..1546080 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| DHB4_RS07730 () | 1546444..1546659 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DHB4_RS07735 () | 1546960..1547172 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DHB4_RS26560 () | 1547227..1547316 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| DHB4_RS07740 () | 1547594..1548346 | - | 753 | WP_001047135.1 | antitermination protein | - |
| DHB4_RS07745 () | 1548360..1549409 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| DHB4_RS07750 () | 1549411..1549689 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| DHB4_RS07755 () | 1549756..1550007 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| DHB4_RS07760 () | 1550224..1550379 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DHB4_RS07765 () | 1550451..1550738 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DHB4_RS07770 () | 1550738..1550977 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DHB4_RS24470 () | 1551002..1551307 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| DHB4_RS07775 () | 1551510..1551842 | + | 333 | WP_001301033.1 | protein FlxA | - |
| DHB4_RS07780 () | 1552279..1552428 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| DHB4_RS07785 () | 1552463..1552741 | - | 279 | Protein_1491 | hypothetical protein | - |
| DHB4_RS07790 () | 1552725..1552955 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| DHB4_RS07795 () | 1553039..1553446 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| DHB4_RS07800 () | 1553613..1553768 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DHB4_RS07805 () | 1553928..1554146 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| DHB4_RS07815 () | 1554714..1554902 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DHB4_RS07820 () | 1554899..1555090 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| DHB4_RS24485 () | 1555183..1555950 | + | 768 | Protein_1498 | exonuclease | - |
| DHB4_RS07830 () | 1555947..1556642 | + | 696 | Protein_1499 | IS3-like element IS2 family transposase | - |
| DHB4_RS26570 () | 1556656..1556961 | + | 306 | Protein_1500 | DUF3596 domain-containing protein | - |
| DHB4_RS07850 () | 1558292..1559149 | + | 858 | Protein_1502 | site-specific integrase | - |
| DHB4_RS25960 () | 1559169..1559279 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| DHB4_RS07855 () | 1559337..1560356 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| DHB4_RS07860 () | 1560368..1561582 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DHB4_RS07865 () | 1561788..1562114 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| DHB4_RS07870 () | 1562249..1562590 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| DHB4_RS07875 () | 1562625..1563185 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DHB4_RS07880 () | 1563188..1563898 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |