MGE detailed information
MGE type: Conjugative plasmid MGE length: 62183 bp
Accession: NZ_CP013834 Location: 1..62183 Organism: Escherichia coli strain JJ2434 Replicon: plasmid pJJ2434_2
Accession: NZ_CP013834 Location: 1..62183 Organism: Escherichia coli strain JJ2434 Replicon: plasmid pJJ2434_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVR68_RS28910 () | 228..461 | - | 234 | WP_072198535.1 | hypothetical protein | - |
| AVR68_RS00735 () | 695..1108 | - | 414 | Protein_2 | hypothetical protein | - |
| AVR68_RS26950 () | 1101..1322 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| AVR68_RS00740 () | 1458..1974 | - | 517 | Protein_4 | type IV conjugative transfer system lipoprotein TraV | - |
| AVR68_RS00745 () | 1971..2291 | - | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| AVR68_RS00750 () | 2292..2868 | - | 577 | Protein_6 | conjugal transfer protein TraP | - |
| AVR68_RS00755 () | 2858..4286 | - | 1429 | Protein_7 | conjugal transfer protein TraB | - |
| AVR68_RS00760 () | 4286..5014 | - | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| AVR68_RS00765 () | 5001..5565 | - | 565 | Protein_9 | type IV conjugative transfer system protein TraE | - |
| AVR68_RS26955 () | 5587..5673 | - | 87 | WP_032163522.1 | conjugal transfer protein TraL | - |
| AVR68_RS26960 () | 5670..5896 | - | 227 | Protein_11 | type IV conjugative transfer system protein TraL | - |
| AVR68_RS00770 () | 5911..6273 | - | 363 | WP_012881131.1 | type IV conjugative transfer system pilin TraA | - |
| AVR68_RS00775 () | 6307..6546 | - | 240 | WP_059219409.1 | conjugal transfer relaxosome protein TraY | - |
| AVR68_RS00780 () | 6655..7302 | - | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| AVR68_RS00785 () | 7493..7877 | - | 385 | Protein_15 | relaxosome protein TraM | - |
| AVR68_RS00790 () | 8210..8800 | + | 591 | WP_000252683.1 | hypothetical protein | VF |
| AVR68_RS00795 () | 9096..9916 | - | 821 | Protein_17 | DUF945 domain-containing protein | - |
| AVR68_RS00800 () | 10030..10320 | - | 291 | WP_149010534.1 | hypothetical protein | - |
| AVR68_RS00810 () | 10619..10993 | + | 375 | Protein_19 | hypothetical protein | - |
| AVR68_RS26970 () | 11231..11389 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 11433..11657 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 11433..11657 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 11433..11657 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 11433..11657 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| AVR68_RS26975 () | 11469..11648 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| AVR68_RS29615 () | 11626..11782 | - | 157 | Protein_22 | plasmid SOS inhibition protein A | - |
| AVR68_RS00815 () | 11863..12513 | + | 651 | WP_000993921.1 | IS66 family transposase IS679 | Transposase |
| AVR68_RS00820 () | 12513..12860 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| AVR68_RS00825 () | 12880..14451 | + | 1572 | WP_059219400.1 | IS66 family transposase ISCro1 | Transposase |
| AVR68_RS00830 () | 14483..15099 | - | 617 | Protein_26 | plasmid SOS inhibition protein A | - |
| AVR68_RS00835 () | 15096..15530 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| AVR68_RS00840 () | 15599..17563 | - | 1965 | WP_000117316.1 | ParB/RepB/Spo0J family partition protein | - |
| AVR68_RS00845 () | 17624..17857 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| AVR68_RS00850 () | 17915..18442 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| AVR68_RS28920 () | 18836..19217 | + | 382 | Protein_31 | pilus protein | - |
| AVR68_RS00860 () | 19302..19865 | - | 564 | WP_001309257.1 | class I SAM-dependent methyltransferase | - |
| AVR68_RS00865 () | 19912..21273 | - | 1362 | WP_000170705.1 | DUF3560 domain-containing protein | - |
| AVR68_RS00870 () | 21325..21555 | - | 231 | WP_000218644.1 | hypothetical protein | - |
| AVR68_RS30190 () | 22235..22543 | + | 309 | WP_050576143.1 | hypothetical protein | - |
| AVR68_RS00880 () | 22522..22713 | - | 192 | WP_001027049.1 | hypothetical protein | - |
| AVR68_RS00885 () | 22713..23132 | - | 420 | WP_000271737.1 | DUF1380 family protein | - |
| AVR68_RS00890 () | 23179..23481 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| AVR68_RS00895 () | 24020..24790 | - | 771 | WP_059219401.1 | hypothetical protein | - |
| AVR68_RS00900 () | 24835..25269 | - | 435 | WP_059219402.1 | DUF1380 family protein | - |
| AVR68_RS00905 () | 25283..25504 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| AVR68_RS00910 () | 25505..26188 | - | 684 | WP_000085885.1 | DNA methylase | - |
| AVR68_RS28940 () | 26265..26576 | - | 312 | WP_032144809.1 | hypothetical protein | - |
| AVR68_RS00920 () | 26573..27475 | - | 903 | WP_077872043.1 | DUF1281 domain-containing protein | - |
| AVR68_RS00930 () | 28011..28973 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| AVR68_RS00935 () | 28976..29326 | + | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| AVR68_RS00950 () | 29729..30181 | - | 453 | WP_000670962.1 | N-acetyltransferase | - |
| AVR68_RS00955 () | 30712..30921 | + | 210 | WP_001535752.1 | microcin B17 | - |
| AVR68_RS00960 () | 30948..31835 | + | 888 | WP_000243884.1 | McbB family protein | - |
| AVR68_RS00965 () | 31837..32655 | + | 819 | Protein_50 | SagB/ThcOx family dehydrogenase | - |
| AVR68_RS00970 () | 32636..33826 | + | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| AVR68_RS00975 () | 33836..34561 | + | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| AVR68_RS00980 () | 34558..35289 | + | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| AVR68_RS00985 () | 35293..35857 | + | 565 | Protein_54 | pentapeptide repeat-containing protein | - |
| AVR68_RS00990 () | 36427..37093 | + | 667 | Protein_55 | hypothetical protein | - |
| AVR68_RS00995 () | 37129..37428 | - | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AVR68_RS01000 () | 37418..37681 | - | 264 | WP_001089473.1 | hypothetical protein | - |
| AVR68_RS28950 () | 37788..38048 | - | 261 | WP_019842130.1 | hypothetical protein | - |
| AVR68_RS01010 () | 38750..39607 | - | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| AVR68_RS27020 () | 39600..39674 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| AVR68_RS01020 () | 39919..40167 | - | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| AVR68_RS26800 () | 40452..40601 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 40646..40705 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 40646..40705 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 40646..40705 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 40646..40705 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| AVR68_RS01025 () | 40848..41321 | - | 474 | WP_016240489.1 | hypothetical protein | - |
| AVR68_RS01030 () | 41475..42065 | - | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| AVR68_RS27040 () | 42103..42312 | - | 210 | WP_071888758.1 | hemolysin expression modulator Hha | - |
| AVR68_RS01035 () | 42381..42818 | - | 438 | Protein_66 | thermonuclease family protein | - |
| AVR68_RS01040 () | 43063..43275 | - | 213 | WP_052983100.1 | ANR family transcriptional regulator | - |
| AVR68_RS01045 () | 43408..43969 | - | 562 | Protein_68 | fertility inhibition protein FinO | - |
| AVR68_RS01050 () | 44024..44770 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| AVR68_RS01055 () | 44790..50060 | - | 5271 | WP_059219404.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVR68_RS01060 () | 50060..52285 | - | 2226 | WP_059219405.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVR68_RS01065 () | 52336..52878 | - | 543 | WP_072129301.1 | hypothetical protein | - |
| AVR68_RS01070 () | 53275..54006 | - | 732 | WP_059219406.1 | complement resistance protein TraT | - |
| AVR68_RS01075 () | 54020..54529 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| AVR68_RS30195 () | 54526..55617 | - | 1092 | WP_137475243.1 | methyl-accepting chemotaxis protein | - |
| AVR68_RS29635 () | 55614..57347 | - | 1734 | WP_071888760.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AVR68_RS29640 () | 57344..58708 | - | 1365 | Protein_77 | conjugal transfer protein TraH | - |
| AVR68_RS28980 () | 58708..59052 | - | 345 | WP_077872040.1 | F-type conjugal transfer protein TrbF | - |
| AVR68_RS28985 () | 59084..59413 | - | 330 | WP_059219408.1 | P-type conjugative transfer protein TrbJ | - |
| AVR68_RS29645 () | 59343..59885 | - | 543 | Protein_80 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AVR68_RS27060 () | 59872..60108 | - | 237 | Protein_81 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AVR68_RS01115 () | 60909..61650 | - | 742 | Protein_82 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVR68_RS01120 () | 61643..61901 | - | 259 | Protein_83 | conjugal transfer protein TrbE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|