MGE detailed information
MGE type: Prophage MGE length: 14004 bp
Accession: NZ_CP012735 Location: 3901472..3915475 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Accession: NZ_CP012735 Location: 3901472..3915475 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT98_RS21380 (3897315) | 3897315..3898079 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| AOT98_RS21390 (3898398) | 3898398..3898877 | + | 480 | Protein_3818 | cupin domain-containing protein | - |
| AOT98_RS21395 (3898932) | 3898932..3899629 | + | 698 | WP_227804325.1 | IS1 family transposase | - |
| AOT98_RS21400 (3899623) | 3899623..3899790 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| AOT98_RS21405 (3900192) | 3900192..3900953 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| AOT98_RS21410 (3901021) | 3901021..3901224 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| AOT98_RS21415 (3901472) | 3901472..3903751 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| AOT98_RS21420 (3904085) | 3904085..3904834 | - | 750 | Protein_3824 | fimbrial protein | - |
| AOT98_RS21425 (3904890) | 3904890..3905587 | + | 698 | WP_227804319.1 | IS1 family transposase | - |
| AOT98_RS21430 (3905605) | 3905605..3906483 | + | 879 | Protein_3826 | IS3-like element IS600 family transposase | - |
| AOT98_RS21435 (3906508) | 3906508..3906687 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| AOT98_RS29845 (3906837) | 3906837..3906998 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| AOT98_RS21440 (3906998) | 3906998..3907183 | - | 186 | Protein_3829 | DUF1737 domain-containing protein | - |
| AOT98_RS21445 (3907443) | 3907443..3907778 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| AOT98_RS29405 (3908059) | 3908059..3908167 | - | 109 | Protein_3831 | DUF3927 family protein | - |
| AOT98_RS21470 (3909088) | 3909088..3909909 | - | 822 | WP_000762882.1 | antitermination protein | - |
| AOT98_RS21475 (3909924) | 3909924..3910280 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AOT98_RS21480 (3910293) | 3910293..3911342 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| AOT98_RS21485 (3911344) | 3911344..3911622 | - | 279 | Protein_3835 | hypothetical protein | - |
| AOT98_RS21490 (3911689) | 3911689..3911940 | - | 252 | WP_000980987.1 | protein Rem | - |
| AOT98_RS21495 (3912158) | 3912158..3912313 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOT98_RS21500 (3912385) | 3912385..3912672 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AOT98_RS21505 (3912672) | 3912672..3912911 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AOT98_RS28260 (3912936) | 3912936..3913241 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| AOT98_RS21510 (3913238) | 3913238..3914394 | - | 1157 | Protein_3841 | IS3-like element IS600 family transposase | - |
| AOT98_RS21515 (3914456) | 3914456..3915475 | + | 1020 | Protein_3842 | MHS family MFS transporter YdfJ | - |
| AOT98_RS21520 (3915564) | 3915564..3917024 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| AOT98_RS21525 (3917060) | 3917060..3917263 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AOT98_RS21530 (3917441) | 3917441..3918127 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| AOT98_RS21535 (3918216) | 3918216..3918962 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |