MGE detailed information
MGE type: Genomic_island MGE length: 21019 bp
Accession: NZ_CP012735 Location: 1329880..1350898 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Accession: NZ_CP012735 Location: 1329880..1350898 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT98_RS07585 (1324992) | 1324992..1325327 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| AOT98_RS07590 (1325398) | 1325398..1326897 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| AOT98_RS07595 (1327129) | 1327129..1328328 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| AOT98_RS07605 (1328857) | 1328857..1329554 | + | 698 | WP_227804279.1 | IS1 family transposase | - |
| AOT98_RS07610 (1329572) | 1329572..1329864 | - | 293 | Protein_1246 | transposase | - |
| AOT98_RS07615 (1330000) | 1330000..1331154 | + | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| AOT98_RS07620 (1331154) | 1331154..1331888 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| AOT98_RS07625 (1332355) | 1332355..1333116 | + | 762 | WP_005090407.1 | fimbria/pilus periplasmic chaperone | - |
| AOT98_RS07630 (1333160) | 1333160..1334239 | + | 1080 | WP_005052551.1 | fimbria/pilus outer membrane usher protein | - |
| AOT98_RS07645 (1335798) | 1335798..1336946 | + | 1149 | WP_005052604.1 | fimbria/pilus outer membrane usher protein | - |
| AOT98_RS07650 (1337085) | 1337085..1337597 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| AOT98_RS29015 (1337704) | 1337704..1338465 | - | 762 | Protein_1254 | LuxR C-terminal-related transcriptional regulator | - |
| AOT98_RS07660 (1338711) | 1338711..1339475 | + | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| AOT98_RS07665 (1339468) | 1339468..1339944 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| AOT98_RS07670 (1340031) | 1340031..1341029 | - | 999 | Protein_1257 | DUF2776 family protein | - |
| AOT98_RS07685 (1341446) | 1341446..1343035 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| AOT98_RS07690 (1343297) | 1343297..1344919 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| AOT98_RS30145 (1345109) | 1345109..1345222 | + | 114 | WP_001296785.1 | protein YhiY | - |
| AOT98_RS07695 (1345285) | 1345285..1346352 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| AOT98_RS07700 (1346349) | 1346349..1349084 | + | 2736 | WP_000149170.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| AOT98_RS07705 (1349084) | 1349084..1350208 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| AOT98_RS07710 (1350267) | 1350267..1350542 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| AOT98_RS07715 (1350539) | 1350539..1350898 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| AOT98_RS07720 (1351018) | 1351018..1351419 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| AOT98_RS07725 (1351425) | 1351425..1352231 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| AOT98_RS07730 (1352228) | 1352228..1352992 | - | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| AOT98_RS07735 (1352992) | 1352992..1353825 | - | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| AOT98_RS07740 (1353822) | 1353822..1354766 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |