MGE detailed information
MGE type: IScluster/Tn MGE length: 22091 bp
Accession: NZ_CP012501 Location: 19702..41792 Organism: Escherichia coli strain 08-00022 Replicon: plasmid pCFSAN004179G
Accession: NZ_CP012501 Location: 19702..41792 Organism: Escherichia coli strain 08-00022 Replicon: plasmid pCFSAN004179G
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS00135 () | 16335..17111 | + | 777 | WP_000217412.1 | transcriptional regulator LldR | - |
| CP48_RS00140 () | 17108..18255 | + | 1148 | Protein_24 | quinone-dependent L-lactate dehydrogenase | - |
| CP48_RS31815 () | 18920..19075 | + | 156 | WP_000074142.1 | hypothetical protein | - |
| CP48_RS00145 () | 19421..19979 | + | 559 | Protein_26 | hypothetical protein | - |
| CP48_RS00150 () | 19903..20457 | + | 555 | Protein_27 | IS21 family transposase ISEc10 | Transposase |
| CP48_RS00155 () | 20597..20878 | + | 282 | WP_024166187.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CP48_RS00160 () | 20887..21168 | + | 282 | WP_001081196.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| CP48_RS00165 () | 21418..22072 | - | 655 | Protein_30 | IS481 family transposase ISErsp1 | Transposase |
| CP48_RS00170 () | 22225..23183 | - | 959 | Protein_31 | IS3 family transposase ISEc48 | Transposase |
| CP48_RS00175 () | 23232..24236 | + | 1005 | WP_001179712.1 | IS110 family transposase ISPlu13 | Transposase |
| CP48_RS00180 () | 24504..24780 | - | 277 | Protein_33 | IS3 family transposase ISEcl1 | Transposase |
| CP48_RS00200 () | 26048..27535 | + | 1488 | WP_001364036.1 | PhoPQ-regulated protein | - |
| CP48_RS00205 () | 27539..28227 | - | 689 | Protein_36 | L-lactate permease | - |
| CP48_RS00210 () | 28589..28798 | + | 210 | WP_136752748.1 | hypothetical protein | - |
| CP48_RS31015 () | 28789..28959 | + | 171 | Protein_38 | IS256 family transposase IS1414 | Transposase |
| CP48_RS00215 () | 29052..29912 | - | 861 | WP_000704517.1 | putative protein YcjY | VF |
| CP48_RS00220 () | 29962..30150 | - | 189 | Protein_40 | traX family protein | - |
| CP48_RS00225 () | 30279..30479 | + | 201 | Protein_41 | CPBP family intramembrane metalloprotease | - |
| CP48_RS31020 () | 30572..30829 | + | 258 | WP_000557618.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CP48_RS00235 () | 30762..31163 | + | 402 | WP_148713600.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CP48_RS00240 () | 31282..31486 | + | 205 | Protein_44 | hypothetical protein | - |
| CP48_RS00245 () | 31795..32304 | + | 510 | WP_000348341.1 | hypothetical protein | - |
| CP48_RS00250 () | 32961..33581 | + | 621 | WP_000269721.1 | hypothetical protein | - |
| CP48_RS00255 () | 33753..34554 | + | 802 | Protein_47 | IS256 family transposase IS1414 | Transposase |
| CP48_RS31025 () | 34634..34714 | + | 81 | Protein_48 | IS3 family transposase IS1351 | Transposase |
| CP48_RS00285 () | 36055..37057 | + | 1003 | Protein_50 | IS3 family transposase IS1351 | Transposase |
| CP48_RS00290 () | 37577..38596 | + | 1020 | WP_024166190.1 | IS110 family transposase ISEc11 | Transposase |
| CP48_RS00295 () | 38871..39122 | + | 252 | WP_000121742.1 | hypothetical protein | Antitoxin Detail |
| CP48_RS00300 () | 39112..39393 | + | 282 | WP_000220565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CP48_RS00305 () | 39876..40939 | + | 1064 | Protein_54 | IS256 family transposase IS1414 | Transposase |
| CP48_RS00310 () | 40939..41792 | - | 854 | Protein_55 | IS3 family transposase IS3 | Transposase |
| CP48_RS31030 () | 41852..42007 | + | 156 | Protein_56 | ISKra4 family transposase | - |
| CP48_RS00320 () | 43284..43505 | + | 222 | WP_032287374.1 | hypothetical protein | - |
| CP48_RS00325 () | 44043..44519 | + | 477 | WP_000072548.1 | type VI secretion system contractile sheath small subunit | - |
| CP48_RS00330 () | 44522..46000 | + | 1479 | WP_000156834.1 | type VI secretion system contractile sheath large subunit | - |
| CP48_RS00335 () | 46010..46522 | + | 513 | WP_024166215.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|