MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 49584 bp
Accession: NZ_CP012345 Location: 1..49584 Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 Replicon: plasmid pCFSAN000679_01
Accession: NZ_CP012345 Location: 1..49584 Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 Replicon: plasmid pCFSAN000679_01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEEC0708_RS24415 () | 6..899 | + | 894 | WP_001541536.1 | virulence genes transcriptional activator SpvR | - |
| SEEC0708_RS24420 () | 1073..1237 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SEEC0708_RS24425 () | 1411..2178 | + | 768 | WP_001541537.1 | virulence protein SpvA | - |
| SEEC0708_RS24995 () | 2141..2308 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| SEEC0708_RS24430 () | 2360..4135 | + | 1776 | WP_079961211.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SEEC0708_RS24435 () | 4416..5141 | + | 726 | WP_079961210.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SEEC0708_RS24440 () | 5402..6052 | + | 651 | WP_001541540.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SEEC0708_RS24445 () | 6179..6604 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| SEEC0708_RS24450 () | 6661..7011 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SEEC0708_RS24455 () | 7078..7637 | - | 560 | Protein_9 | inverse autotransporter beta domain-containing protein | - |
| SEEC0708_RS24460 () | 8357..8842 | - | 486 | WP_000905606.1 | membrane protein | - |
| SEEC0708_RS24465 () | 8836..9345 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SEEC0708_RS24470 () | 9272..10040 | - | 769 | Protein_12 | EAL domain-containing protein | - |
| SEEC0708_RS24475 () | 10049..10831 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| SEEC0708_RS24480 () | 10866..11387 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| SEEC0708_RS24485 () | 11384..11674 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| SEEC0708_RS24490 () | 11676..11981 | - | 306 | WP_001541545.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SEEC0708_RS24495 () | 11983..12201 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SEEC0708_RS24500 () | 12877..13398 | + | 522 | WP_080147800.1 | hypothetical protein | - |
| SEEC0708_RS25000 () | 13442..13870 | - | 429 | Protein_19 | hypothetical protein | - |
| SEEC0708_RS24510 () | 13882..14177 | + | 296 | Protein_20 | cytoplasmic protein | - |
| SEEC0708_RS24515 () | 14671..15660 | + | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| SEEC0708_RS24520 () | 15949..16110 | - | 162 | WP_001541548.1 | hypothetical protein | - |
| SEEC0708_RS24525 () | 16163..16549 | - | 387 | WP_001541549.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SEEC0708_RS24535 () | 17255..17557 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SEEC0708_RS24540 () | 17832..18350 | + | 519 | WP_079961207.1 | major pilin PefA | - |
| SEEC0708_RS24545 () | 18577..20985 | + | 2409 | WP_001541550.1 | outer membrane usher protein PefC | - |
| SEEC0708_RS24550 () | 20978..21670 | + | 693 | WP_001038509.1 | fimbrial chaperone PefD | - |
| SEEC0708_RS24555 () | 21688..21864 | + | 177 | WP_162299956.1 | hypothetical protein | - |
| SEEC0708_RS24565 () | 22328..23209 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| SEEC0708_RS24570 () | 23190..23267 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SEEC0708_RS24575 () | 23517..23783 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| SEEC0708_RS24585 () | 24114..24269 | - | 156 | WP_001719547.1 | hypothetical protein | - |
| SEEC0708_RS24590 () | 24285..24558 | - | 274 | Protein_33 | disulfide bond formation protein DsbA | - |
| SEEC0708_RS24595 () | 24675..25238 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| SEEC0708_RS24600 () | 25293..26033 | - | 741 | WP_000177630.1 | conjugal transfer pilus acetylase TraX | - |
| SEEC0708_RS24605 () | 26053..28547 | - | 2495 | Protein_36 | conjugative relaxase | - |
| SEEC0708_RS24610 () | 28629..28856 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SEEC0708_RS24615 () | 28856..29254 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SEEC0708_RS24620 () | 29263..31488 | - | 2226 | WP_110301494.1 | type IV conjugative transfer system coupling protein TraD | - |
| SEEC0708_RS24625 () | 31860..32591 | - | 732 | WP_001541558.1 | complement resistance protein TraT | - |
| SEEC0708_RS24635 () | 32894..33136 | - | 243 | WP_024131413.1 | hypothetical protein | - |
| SEEC0708_RS24640 () | 33133..33834 | - | 702 | WP_148201696.1 | hypothetical protein | - |
| SEEC0708_RS24645 () | 34136..34558 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SEEC0708_RS24650 () | 34558..35832 | + | 1275 | WP_001541560.1 | Y-family DNA polymerase | - |
| SEEC0708_RS24655 () | 35914..36888 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| SEEC0708_RS24660 () | 36888..38093 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SEEC0708_RS24665 () | 38508..39449 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SEEC0708_RS24670 () | 39481..40047 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SEEC0708_RS24675 () | 40104..40439 | - | 336 | WP_001541563.1 | hypothetical protein | - |
| SEEC0708_RS24680 () | 40623..41039 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| SEEC0708_RS24685 () | 41125..42240 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SEEC0708_RS24690 () | 42685..42987 | + | 303 | WP_014411932.1 | hypothetical protein | - |
| SEEC0708_RS24700 () | 43642..44382 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SEEC0708_RS24705 () | 44589..45149 | + | 561 | WP_010904491.1 | recombinase family protein | - |
| SEEC0708_RS24710 () | 45133..46797 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SEEC0708_RS24715 () | 46730..47755 | + | 1026 | WP_077905935.1 | ExeA family protein | - |
| SEEC0708_RS24720 () | 47944..48981 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|