MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP012140 Location: 3655872..3675616 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Accession: NZ_CP012140 Location: 3655872..3675616 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD871_RS19860 (3652004) | 3652004..3652948 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| AD871_RS19865 (3652945) | 3652945..3653778 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| AD871_RS19870 (3653778) | 3653778..3654542 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| AD871_RS19875 (3654539) | 3654539..3655345 | + | 807 | WP_061456188.1 | nickel import ATP-binding protein NikE | - |
| AD871_RS19880 (3655351) | 3655351..3655752 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| AD871_RS19885 (3655872) | 3655872..3656231 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| AD871_RS19890 (3656228) | 3656228..3656503 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| AD871_RS19895 (3656562) | 3656562..3657686 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| AD871_RS19900 (3657686) | 3657686..3660421 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| AD871_RS19905 (3660418) | 3660418..3661485 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| AD871_RS30690 (3661548) | 3661548..3661661 | - | 114 | WP_001296785.1 | protein YhiY | - |
| AD871_RS19910 (3661851) | 3661851..3663473 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| AD871_RS19915 (3663735) | 3663735..3665324 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| AD871_RS19930 (3665741) | 3665741..3666739 | + | 999 | Protein_3670 | DUF2776 domain-containing protein | - |
| AD871_RS19935 (3666826) | 3666826..3667302 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| AD871_RS19940 (3667295) | 3667295..3668059 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| AD871_RS19945 (3668305) | 3668305..3669066 | + | 762 | Protein_3673 | Transcriptional regulatory protein TdiR | VF |
| AD871_RS19950 (3669173) | 3669173..3669685 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| AD871_RS19955 (3669824) | 3669824..3670972 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| AD871_RS19965 (3671064) | 3671064..3672292 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| AD871_RS19970 (3672531) | 3672531..3673610 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| AD871_RS19975 (3673654) | 3673654..3674415 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| AD871_RS19980 (3674882) | 3674882..3675616 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| AD871_RS19985 (3675616) | 3675616..3676770 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| AD871_RS19990 (3676906) | 3676906..3677198 | + | 293 | Protein_3681 | transposase | - |
| AD871_RS20000 (3678442) | 3678442..3679641 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |