MGE detailed information
MGE type: Prophage MGE length: 16448 bp
Accession: NZ_CP012140 Location: 1342358..1358805 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Accession: NZ_CP012140 Location: 1342358..1358805 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD871_RS07400 () | 1338440..1339081 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| AD871_RS07405 () | 1339137..1340315 | - | 1179 | WP_000173487.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| AD871_RS07410 () | 1340449..1340739 | + | 291 | Protein_1338 | DNA damage-inducible protein YebG | - |
| AD871_RS07415 () | 1340806..1341162 | + | 357 | WP_005047608.1 | protein YebF | - |
| AD871_RS07425 () | 1341489..1342148 | + | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| AD871_RS07430 () | 1342358..1344418 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| AD871_RS07435 () | 1344415..1345077 | - | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
| AD871_RS07440 () | 1345101..1345757 | - | 657 | Protein_1343 | carbon-nitrogen hydrolase family protein | - |
| AD871_RS07445 () | 1345859..1346089 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AD871_RS07450 () | 1346228..1346602 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AD871_RS28620 () | 1346606..1347478 | + | 873 | Protein_1346 | copper homeostasis membrane protein CopD | - |
| AD871_RS07465 () | 1347491..1347832 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1347860..1348094 | - | 235 | - | - | Antitoxin Detail |
| - | 1347990..1348093 | + | 104 | - | - | Toxin Detail |
| AD871_RS30425 () | 1348225..1349302 | - | 1078 | Protein_1348 | phage integrase Arm DNA-binding domain-containing protein | - |
| AD871_RS28635 () | 1349268..1349549 | - | 282 | WP_005127484.1 | excisionase | - |
| AD871_RS07480 () | 1349666..1350514 | - | 849 | Protein_1350 | IS3 family transposase ISSd1 | Transposase |
| AD871_RS28640 () | 1350569..1351764 | + | 1196 | Protein_1351 | IS3 family transposase | - |
| AD871_RS07500 () | 1351807..1352117 | - | 311 | Protein_1352 | IS3 family transposase ISSfl10 | Transposase |
| AD871_RS07505 () | 1352181..1352648 | + | 468 | Protein_1353 | DNA-binding transcriptional regulator PgrR | - |
| AD871_RS07515 () | 1352985..1354598 | + | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| AD871_RS07520 () | 1354649..1355680 | - | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| AD871_RS07525 () | 1355808..1356172 | + | 365 | Protein_1356 | IS3 family transposase IS911 | Transposase |
| AD871_RS07530 () | 1356356..1357543 | - | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| AD871_RS07535 () | 1357543..1357908 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| AD871_RS07540 () | 1357993..1358805 | + | 813 | Protein_1359 | IS3 family transposase ISLad1 | Transposase |
| AD871_RS28645 () | 1359005..1359262 | + | 258 | Protein_1360 | DUF2534 family protein | - |
| AD871_RS07545 () | 1359312..1360262 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| AD871_RS07550 () | 1360414..1361166 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| AD871_RS07555 () | 1361361..1361876 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| AD871_RS07560 () | 1361887..1362030 | - | 144 | Protein_1364 | AbgT family transporter | - |
| AD871_RS30430 () | 1362030..1362246 | + | 217 | Protein_1365 | LysR family transcriptional regulator | - |
| AD871_RS07570 () | 1362420..1363235 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120364 | NZ_CP037923 | 1317756..1337986 | 0.006 |