MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP012137 Location: 3634449..3654193 Organism: Shigella flexneri 2a strain 981 Replicon: chromosome
Accession: NZ_CP012137 Location: 3634449..3654193 Organism: Shigella flexneri 2a strain 981 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD867_RS19650 (3630581) | 3630581..3631525 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| AD867_RS19655 (3631522) | 3631522..3632355 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| AD867_RS19660 (3632355) | 3632355..3633119 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| AD867_RS19665 (3633116) | 3633116..3633922 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| AD867_RS19670 (3633928) | 3633928..3634329 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| AD867_RS19675 (3634449) | 3634449..3634808 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| AD867_RS19680 (3634805) | 3634805..3635080 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| AD867_RS19685 (3635139) | 3635139..3636263 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| AD867_RS19690 (3636263) | 3636263..3638998 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| AD867_RS19695 (3638995) | 3638995..3640062 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| AD867_RS31520 (3640125) | 3640125..3640238 | - | 114 | WP_001296785.1 | protein YhiY | - |
| AD867_RS19700 (3640428) | 3640428..3642050 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| AD867_RS19705 (3642312) | 3642312..3643901 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| AD867_RS19720 (3644318) | 3644318..3645316 | + | 999 | Protein_3631 | DUF2776 family protein | - |
| AD867_RS19725 (3645403) | 3645403..3645879 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| AD867_RS19730 (3645872) | 3645872..3646636 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| AD867_RS30370 (3646882) | 3646882..3647643 | + | 762 | Protein_3634 | Transcriptional regulatory protein TdiR | VF |
| AD867_RS19740 (3647750) | 3647750..3648262 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| AD867_RS19745 (3648401) | 3648401..3649549 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| AD867_RS19755 (3649641) | 3649641..3650869 | + | 1229 | WP_167550004.1 | IS3 family transposase IS2 | Transposase |
| AD867_RS19760 (3651108) | 3651108..3652187 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| AD867_RS19765 (3652231) | 3652231..3652992 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| AD867_RS19770 (3653459) | 3653459..3654193 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| AD867_RS19775 (3654193) | 3654193..3655347 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| AD867_RS19780 (3655483) | 3655483..3655775 | + | 293 | Protein_3642 | transposase | - |
| AD867_RS19795 (3657019) | 3657019..3658218 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |