MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP011342 Location: 1612692..1634398 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Accession: NZ_CP011342 Location: 1612692..1634398 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U068_RS07980 () | 1609207..1609953 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| U068_RS07985 () | 1610042..1610728 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| U068_RS07990 () | 1610905..1611108 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| U068_RS07995 () | 1611143..1612603 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| U068_RS08000 () | 1612692..1614059 | - | 1368 | Protein_1525 | MHS family MFS transporter | - |
| U068_RS25345 () | 1614580..1614693 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| U068_RS08005 () | 1614762..1614995 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| U068_RS08010 () | 1615312..1615902 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| U068_RS08015 () | 1616000..1616575 | - | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| U068_RS08020 () | 1616575..1617537 | - | 963 | WP_001027733.1 | phage tail protein | - |
| U068_RS08025 () | 1617488..1618057 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| U068_RS08030 () | 1618446..1618679 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| U068_RS08035 () | 1618737..1619147 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| U068_RS08040 () | 1619299..1619472 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| U068_RS08045 () | 1619644..1619799 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| U068_RS25350 () | 1619878..1619943 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| U068_RS23550 () | 1619946..1620134 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| U068_RS08050 () | 1620145..1620357 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| U068_RS08055 () | 1620720..1621217 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| U068_RS08060 () | 1621214..1621747 | - | 534 | WP_001092971.1 | lysozyme | - |
| U068_RS08065 () | 1621744..1622055 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| U068_RS08070 () | 1622060..1622275 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| U068_RS25800 () | 1622495..1622665 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| U068_RS08075 () | 1623029..1623244 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| U068_RS08080 () | 1623545..1623757 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| U068_RS25355 () | 1623812..1623901 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| U068_RS08085 () | 1624179..1624931 | - | 753 | WP_001047135.1 | antitermination protein | - |
| U068_RS08090 () | 1624945..1625994 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| U068_RS08095 () | 1625996..1626274 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| U068_RS08100 () | 1626341..1626592 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| U068_RS08105 () | 1626809..1626964 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| U068_RS08110 () | 1627036..1627323 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| U068_RS08115 () | 1627323..1627562 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| U068_RS23555 () | 1627587..1627892 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| U068_RS08120 () | 1628095..1628427 | + | 333 | WP_001301033.1 | protein FlxA | - |
| U068_RS08125 () | 1628864..1629013 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| U068_RS08130 () | 1629048..1629326 | - | 279 | Protein_1557 | hypothetical protein | - |
| U068_RS08135 () | 1629310..1629540 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| U068_RS08140 () | 1629624..1630031 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| U068_RS08145 () | 1630198..1630353 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| U068_RS08150 () | 1630513..1630731 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| U068_RS08160 () | 1631299..1631487 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| U068_RS08165 () | 1631484..1631675 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| U068_RS23570 () | 1631768..1632535 | + | 768 | Protein_1564 | exonuclease | - |
| U068_RS08175 () | 1632532..1633227 | + | 696 | Protein_1565 | IS3 family transposase IS2 | Transposase |
| U068_RS25365 () | 1633241..1634398 | + | 1158 | Protein_1566 | Putative defective protein IntQ ; Integrase | Integrase |
| U068_RS24835 () | 1634418..1634528 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| U068_RS08185 () | 1634586..1635605 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| U068_RS08190 () | 1635617..1636831 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| U068_RS08195 () | 1637037..1637363 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| U068_RS08200 () | 1637498..1637839 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| U068_RS08205 () | 1637874..1638434 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| U068_RS08210 () | 1638437..1639147 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |