MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP011342 Location: 1393868..1415542 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Accession: NZ_CP011342 Location: 1393868..1415542 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U068_RS25780 () | 1389857..1389904 | + | 48 | WP_211180494.1 | protein YnaN | - |
| U068_RS06950 () | 1389918..1390901 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| U068_RS06960 () | 1391379..1392752 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| U068_RS06965 () | 1392881..1393816 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| U068_RS23445 () | 1393868..1395103 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| U068_RS06975 () | 1395105..1395320 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| U068_RS06980 () | 1395399..1395608 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1395424..1395602 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1395424..1395602 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1395424..1395602 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1395424..1395602 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| U068_RS06985 () | 1395601..1395795 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| U068_RS06990 () | 1395852..1396661 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| U068_RS06995 () | 1396654..1399254 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| U068_RS07000 () | 1399356..1399631 | - | 276 | WP_000632297.1 | protein RacC | - |
| U068_RS07005 () | 1399706..1399876 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| U068_RS07010 () | 1399876..1400097 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| U068_RS07015 () | 1400539..1401027 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| U068_RS07020 () | 1401024..1401179 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| U068_RS07025 () | 1401633..1402109 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| U068_RS07030 () | 1402233..1402529 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| U068_RS07035 () | 1402552..1402974 | + | 423 | WP_000693797.1 | phage protein | - |
| U068_RS07040 () | 1402987..1403844 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| U068_RS07045 () | 1403851..1404597 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| U068_RS07050 () | 1404620..1405072 | + | 453 | Protein_1340 | DUF1627 domain-containing protein | - |
| U068_RS24785 () | 1405268..1405453 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| U068_RS07060 () | 1405650..1407107 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| U068_RS07065 () | 1407245..1407508 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| U068_RS07070 () | 1407489..1407848 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| U068_RS07080 () | 1408322..1409254 | + | 933 | Protein_1345 | phage tail length tape measure family protein | - |
| U068_RS07085 () | 1409257..1409472 | + | 216 | Protein_1346 | Ail/Lom family outer membrane beta-barrel protein | - |
| U068_RS07090 () | 1409614..1410594 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| U068_RS24790 () | 1410664..1410852 | + | 189 | Protein_1348 | Ail/Lom family outer membrane beta-barrel protein | - |
| U068_RS23470 () | 1410917..1414279 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| U068_RS07115 () | 1414279..1414854 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| U068_RS07120 () | 1414952..1415542 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| U068_RS07125 () | 1415859..1416092 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| U068_RS25305 () | 1416161..1416274 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| U068_RS07130 () | 1417053..1417487 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| U068_RS07135 () | 1417628..1418761 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |